View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_10 (Length: 498)
Name: NF15673_low_10
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 33 - 286
Target Start/End: Original strand, 10212464 - 10212717
Alignment:
| Q |
33 |
catgttcacttaaccttttcaacttttacttgattagaaacagcttttcctttgtttttctgttgctttgatggtggtgatggtgtccttggataattcc |
132 |
Q |
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| T |
10212464 |
catgttcacttaaccttttcaacttttacttgattagaaacagcttttcctttgtttttctgttgctttgatggtggtgatggtgtccttggataattcc |
10212563 |
T |
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| Q |
133 |
tctccatcctttttctcctgctactccaaaagttcttcacatcattgtctgttctcccttccaaatatgtagcaattttggcccatttgttcccaaattg |
232 |
Q |
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| T |
10212564 |
tctccatcctttttctcctgctactccaaaagttcttcacatcattgtctgttctcccttccaaatatgtagcaattttggcccatttgttcccaaattg |
10212663 |
T |
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| Q |
233 |
cccctgtaattctatcaccaccctttcttcctctgatgaaaacttgcatcctct |
286 |
Q |
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| T |
10212664 |
cccctgtaattctatcaccaccctttcttcctctgatgaaaacttgcatcctct |
10212717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 368 - 482
Target Start/End: Original strand, 10212808 - 10212924
Alignment:
| Q |
368 |
attgttattttacaaattgacacaatcaccaacac------ttgaacaattatgtcattactttaaacttaaaaagaataactcttgttacgtttattgc |
461 |
Q |
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| T |
10212808 |
attgttattttacaaattgacacaaacaccaacaccaacacttga-caataatatcattacttc---cttaaaaagaataactcttattacgtttattgc |
10212903 |
T |
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| Q |
462 |
aaggtaaaatattcttgtatt |
482 |
Q |
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| T |
10212904 |
aaggtaaaatattcttgtatt |
10212924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10212378 - 10212413
Alignment:
| Q |
1 |
attcagaatgatttcgtgattgcggacaataacatg |
36 |
Q |
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| T |
10212378 |
attcagaatgatttcgtgattgcggacaataacatg |
10212413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 572747 - 572856
Alignment:
| Q |
171 |
acatcattgtctgttctcccttccaaatatgtagcaattttggcccatttgttcccaaattgcccctgtaattctatcaccaccctttcttcctctgatg |
270 |
Q |
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| T |
572747 |
acatcattgtctgttcttcctggtaaataggatgcaatcttagcccatttgtttccaaattgttcctgcaactctatcacaatcctctcttcctctattg |
572846 |
T |
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| Q |
271 |
aaaacttgca |
280 |
Q |
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| T |
572847 |
taaacttgca |
572856 |
T |
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