View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_11 (Length: 498)
Name: NF15673_low_11
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 45165785 - 45166251
Alignment:
| Q |
18 |
ataagagcgatgtctatgctttcggagttgtccttctagaattacttactggaagaaaaccaatgcataatatgtcctcagatcaatatcaatctctggt |
117 |
Q |
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| T |
45165785 |
ataagagcgatgtctatgctttcggagttgtccttctagaattacttactggaagaaaaccaatgcataatatgtcctcagatcaatatcaatctctggt |
45165884 |
T |
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| Q |
118 |
tacatgggtatgtattattattacataatggagaaaatggatgaaaatttaagttttgctgtactttatggtttaagactttcaaattcaatatgtaggc |
217 |
Q |
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| T |
45165885 |
tacatgggtatgtattattattacataatggagaatatggatgaaaatttaagttttgctgtactttatggtttaagactttcaaattcaatatgtaggc |
45165984 |
T |
|
| Q |
218 |
catgcctcagctaaccgacagatcaaagcttccaagtattctagatcctgttatccaaaatacaatggatttgaagcatttatatcaggttcattgaata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45165985 |
catgcctcagctaaccgacagatcaaagcttccaagtattctagatcctgttatccaaaatacaatggatttgaagcatttatatcaggttcattgaata |
45166084 |
T |
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| Q |
318 |
gaagtactgtaatcacatgttttaatgctgagtgttaaatgctagtacttcttaattcatctcaacattctactctacaggtagctgcagtggctgtgct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45166085 |
gaagtactgtaatcacatgttttaatgctgagtgttaaatgctagtacttcttaattcatctcaacattctactctacaggtagctgcagtggctgtgct |
45166184 |
T |
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| Q |
418 |
atgtgtgcaagctgaaccaagttacaggccacttataacagatgttctacactctctcatccctttg |
484 |
Q |
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| T |
45166185 |
atgtgtgcaagctgaaccaagttataggccacttataacagatgttctacactctctcatccctttg |
45166251 |
T |
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Back To:
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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 481
Target Start/End: Complemental strand, 49121063 - 49120978
Alignment:
| Q |
396 |
aggtagctgcagtggctgtgctatgtgtgcaagctgaaccaagttacaggccacttataacagatgttctacactctctcatccct |
481 |
Q |
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|||| ||||| || |||||||||||||||||| | || ||||||||| ||||||| || ||||||||||| ||||| ||| ||||| |
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| T |
49121063 |
aggttgctgcggtagctgtgctatgtgtgcaaccagagccaagttaccggccactaatcacagatgttcttcactccctcgtccct |
49120978 |
T |
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