View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_12 (Length: 497)
Name: NF15673_low_12
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 56 - 486
Target Start/End: Original strand, 32002631 - 32003061
Alignment:
| Q |
56 |
aactaatctttttgttaattaagataatgtggaaattagttgttgcatgatatcacactcgattgctacttatgtatttgacaaccaaagtgcgtttgga |
155 |
Q |
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| T |
32002631 |
aactaatctttttgttaattaagataatgtggaaattagttgttgcatgatatcacactcgattgctacttatgtatttgacaaccaaagtgcgtttgga |
32002730 |
T |
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| Q |
156 |
taaatcatgatggaatggggacatacaatgtggtcttagaaatgtaatacataagccttgaaataaattattacaacatgctaaacaaagactaccataa |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32002731 |
taaatcatgatggaatggggacatacaatgtggtcttagaaatgtaatacataagccttgaaataaattattacaacatgctaaacaaagactacaataa |
32002830 |
T |
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| Q |
256 |
nnnnnnnccgattcagattggctaactttgacgcgcgaaaggcatggtgcctttgggtcagcctaatccgttggataaattctctgtttcagatcaagcc |
355 |
Q |
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| T |
32002831 |
ttttttttggattcggattggctaactttgacgcgagaaaggcatggtgcctttgggtcagcctaatccgttggataaattctatgtttcagatcaagcc |
32002930 |
T |
|
| Q |
356 |
acatgttgcatcagtcatcccatataagaggcatgcataactacaaccttcttcgatctatccgttggtgtttgcgacagtcactgcgcaccacctgagt |
455 |
Q |
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| T |
32002931 |
acatgttgcatcagtcatcccatataagaggcatgcataactacaaccttcttcgatctatccgttggtgtttgcgacagtcactgcgcaccacctgagt |
32003030 |
T |
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| Q |
456 |
caccctactaatgccgcagacacactgttca |
486 |
Q |
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| T |
32003031 |
caccctaccaacgccgcagactcgctgttca |
32003061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 32002562 - 32002615
Alignment:
| Q |
18 |
gttttcccacgcgtgtgaaaaattaatcattgcttattaactaatctttttgtt |
71 |
Q |
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| T |
32002562 |
gttttcccacgcgtgtgaaaaattaatcattgcttattaactaatctttttgtt |
32002615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 32003696 - 32003602
Alignment:
| Q |
265 |
gattcagattggctaactttgacgcgcgaaaggcatggtgcctttgggtcagcctaatccgttggataaattctctgtttcagatcaagccacat |
359 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||| ||||| |||| || ||| ||||||| |||||||| |
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| T |
32003696 |
gattcagattggctgagcttgacgcgcgaaaggcatggtgcctttgagtcagcctagtcctttggaaaaatcctatgtctcagatctagccacat |
32003602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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