View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15673_low_13 (Length: 462)
Name: NF15673_low_13
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 19989406 - 19988969
Alignment:
| Q |
8 |
ccaagaatatgataaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttct |
107 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19989406 |
ccaagaatagggtaaccccctaaaaccataacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttct |
19989307 |
T |
|
| Q |
108 |
caacaaccccaaatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaattt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19989306 |
caacaaccccaaatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacatattcaaattt |
19989207 |
T |
|
| Q |
208 |
gggtttaagttgatcaacccaataaacccatttttctgttacggggcgtggccatccaatgaagttgattttcaaaggccactcctctgggtcaaaaaga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19989206 |
gggtttaagttgatcaacccaataaacccatttttctgttacggggcgtggccatccaatgaagttgattttcaaaggccactcctctgggtcaaaaaga |
19989107 |
T |
|
| Q |
308 |
gaagatgggttaaacccagaaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtg |
407 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
19989106 |
gaagatggattaaacccagaaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggcgattctgagaattggttcactgtcaccagctggtg |
19989007 |
T |
|
| Q |
408 |
aaagcatgtgatcttccttcacctccatcaaactatct |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19989006 |
aaagcatgtgatcttccttcacctccatcaaactatct |
19988969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 26646894 - 26646461
Alignment:
| Q |
8 |
ccaagaatatgataaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttct |
107 |
Q |
| |
|
|||| |||| |||||||||| |||||||| | ||| |||||||| || ||||| |||||||| | || ||||| || |||||||||||||||||||||| |
|
|
| T |
26646894 |
ccaataataggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttct |
26646795 |
T |
|
| Q |
108 |
caacaaccccaaatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaattt |
207 |
Q |
| |
|
|||| |||||| ||||||||| ||||| ||| | ||||| ||| | || | ||| || ||||||||||||||||||||||||||||| | |||| |||| |
|
|
| T |
26646794 |
caactaccccatatagcaagtcatgatttttatgtatgcggcaccttgtgcccattattgcttcaaagatgccaactttcttccacactgtttcatattt |
26646695 |
T |
|
| Q |
208 |
gggtttaagttgatcaacccaataaacccatttttctgttacggggcgtggccatccaatgaagttgattttcaaaggccactcctctgggtcaaaaaga |
307 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| | | ||||| |||| ||| ||||||||||||||||||||||||||| ||| ||||||| | |
|
|
| T |
26646694 |
gagtttaagttgatcaacccatctaacccatttggcgcgt---gggcgacgccaaccagtgaagttgattttcaaaggccactcctttggttcaaaaaca |
26646598 |
T |
|
| Q |
308 |
gaa---------gatgggttaaacccagaaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcac |
398 |
Q |
| |
|
||| ||| | |||||| || ||| |||||| | ||||||||||| ||| ||||| ||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
26646597 |
gaagacggtgatgattgtttaaactcaaaagctggttcatgaatggtgtttgcaattggtttcagaaaatgggcgattctgagagttggtgcactgtcac |
26646498 |
T |
|
| Q |
399 |
cagcaggtgaaagcatgtgatcttccttcacctccat |
435 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
26646497 |
cagctggtgaaatcatatgatcttccttcacctccat |
26646461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 437
Target Start/End: Complemental strand, 19955947 - 19955518
Alignment:
| Q |
20 |
taaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaa |
119 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
19955947 |
taaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtatttgtctcacaacaccatttctcaacaactccaa |
19955848 |
T |
|
| Q |
120 |
atagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttg |
219 |
Q |
| |
|
|||||||||| | || ||| | ||| | || || |||||||| ||||| |||||||| ||||||||| |||| ||||||||| | || ||||||||| |
|
|
| T |
19955847 |
atagcaagtttttatttttatgaatgtagcatttagtactcattatagcatcaaagattccaactttcctccaaacagattcatacttttgtttaagttt |
19955748 |
T |
|
| Q |
220 |
atcaacccaataaacccatttttctgttacggggcgtggccatccaatgaagttgattttcaaaggccactcctctgggtcaaaaagagaag-------- |
311 |
Q |
| |
|
|| ||||||| |||||||||| | | | | ||| |||| ||| ||||||||||||||||||| ||||| ||| ||||||| ||||| |
|
|
| T |
19955747 |
atgaacccaagaaacccatttcttttgtgtgaggc---gccagccagtgaagttgattttcaaaggaagctcctttggttcaaaaacagaagaagaagat |
19955651 |
T |
|
| Q |
312 |
-------atgggttaaacccagaaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcag |
404 |
Q |
| |
|
||||||||| | | ||| |||| ||||||||| ||||||||||||||| ||||||||||| ||||||| |||| ||||| |||||||| | |
|
|
| T |
19955650 |
gatgaaaatgggttaagcttaaaagctggtccttcaatggagtttgaaatgggtttaagaaaatgggctgttctgagtgttggatcactatcaccagctg |
19955551 |
T |
|
| Q |
405 |
gtgaaagcatgtgatcttccttcacctccatca |
437 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |
|
|
| T |
19955550 |
gtgaaagcatgaactcttccctcacctccatca |
19955518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 19818431 - 19818220
Alignment:
| Q |
18 |
gataaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaacccc |
117 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19818431 |
gataaccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaacccc |
19818332 |
T |
|
| Q |
118 |
aaatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagt |
217 |
Q |
| |
|
|||||||||||| |||| ||| | ||| | || || |||||||||||||| |||||||| | | |||||||||||||||||||| | || ||||||||| |
|
|
| T |
19818331 |
aaatagcaagttttgatttttatgaatgtagcatttagtactcataatagcatcaaagattctagctttcttccacacagattcatactttggtttaagt |
19818232 |
T |
|
| Q |
218 |
tgatcaacccaa |
229 |
Q |
| |
|
| |||||||||| |
|
|
| T |
19818231 |
tcatcaacccaa |
19818220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 19853384 - 19853167
Alignment:
| Q |
20 |
taaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaa |
119 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||| ||||||||||| || |||||||| || |||||| |||||||||| |||||||||||| |
|
|
| T |
19853384 |
taaccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacacaaatgtattggtctcagaacaccatttgtcaacaaccccac |
19853285 |
T |
|
| Q |
120 |
atagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttg |
219 |
Q |
| |
|
||| |||||| ||||||||||||||||| | ||| |||||||||||||| |||||||| |||||||||||||| | |||||| ||||| ||| |||||| |
|
|
| T |
19853284 |
ataacaagttttgatctttctttatgcagctcttagtactcataatagcatcaaagattccaactttcttccatagtgattcatatttgagttgaagttg |
19853185 |
T |
|
| Q |
220 |
atcaacccaataaaccca |
237 |
Q |
| |
|
||||||||| | |||||| |
|
|
| T |
19853184 |
atcaacccacttaaccca |
19853167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 20 - 437
Target Start/End: Complemental strand, 19812152 - 19811729
Alignment:
| Q |
20 |
taaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaa |
119 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19812152 |
taaccccccaaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaaccccaa |
19812053 |
T |
|
| Q |
120 |
atagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttg |
219 |
Q |
| |
|
| ||||| || ||| ||| |||| ||||||||||||||||||||| |||||||| | | |||||||||||| ||||||| | || |||||||| | |
|
|
| T |
19812052 |
agagcaattttagatttttgagtatgtgacacttggtactcataatagcatcaaagattctagctttcttccacaaagattcatactttggtttaagctc |
19811953 |
T |
|
| Q |
220 |
atcaacccaataaacccatttttctgttacggggcgtggccatccaatgaagttgattttcaaaggccactcctctgggtcaaaaagagaag-------- |
311 |
Q |
| |
|
||||||||| |||||| || ||| | ||| | |||||||| |||| | |||||||||||| ||||| | | | ||||||| ||||| |
|
|
| T |
19811952 |
atcaacccatctaacccacttctcttgt---gggtgacgccatccactgaaatggattttcaaaggacactcattttgatcaaaaaaagaagatgatgaa |
19811856 |
T |
|
| Q |
312 |
-atgggttaaacccagaaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaa |
410 |
Q |
| |
|
|||| |||||| || ||| |||||| | ||||| ||||||||||||||| |||||||| || |||||| | ||| ||||||||||||| |||||||| |
|
|
| T |
19811855 |
aatggattaaactcaaaagctggttcatgaatggagtttgaaatgggtttaagaaaatgagcagttctgaaagttgaatcactgtcaccagaaggtgaaa |
19811756 |
T |
|
| Q |
411 |
gcatgtgatcttccttcacctccatca |
437 |
Q |
| |
|
||||| ||||||| | || ||||||| |
|
|
| T |
19811755 |
gcatgaaatcttccctgacttccatca |
19811729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 19950996 - 19950581
Alignment:
| Q |
20 |
taaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaa |
119 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
19950996 |
taaccccccaaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaatgtattggtctcagtacaccatttctcaacaaccccaa |
19950897 |
T |
|
| Q |
120 |
atagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttg |
219 |
Q |
| |
|
| ||||||||||||| ||| | ||| | || |||||||||||||| |||||||| ||| |||||||||||||||||||| | || |||||||| || |
|
|
| T |
19950896 |
aaagcaagttatgatttttatgtattatgcttttagtactcataatagcatcaaagattccagctttcttccacacagattcatactttggtttaagctg |
19950797 |
T |
|
| Q |
220 |
atcaacccaataaacccatttttctgttacggggcgtggccatccaatgaagttgattttcaaaggccactcctctgggtcaaaaaga---gaagatggg |
316 |
Q |
| |
|
|||| |||| | ||||||| || || | |||| ||| |||| | |||||||||||| |||| ||||| ||||||| | ||| ||||| |
|
|
| T |
19950796 |
ctcaaaccaacattcccatttctcaaatagtttgatgcgccacccattgaaatggattttcaaagggtactcatctggttcaaaaacaaatgaaaatggg |
19950697 |
T |
|
| Q |
317 |
ttaaacccagaaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaagcatgt |
416 |
Q |
| |
|
|||| | | ||| |||||| ||||||| || |||||||||||| |||||||| || |||||| ||| |||| ||| |||| || | |||||| ||||| |
|
|
| T |
19950696 |
ttaagcttaaaagatggttcatcaatggagtctgaaatgggtttaagaaaatgagcagttctgaaaatgggtttactatcactagaaagtgaaatcatgt |
19950597 |
T |
|
| Q |
417 |
gatcttccttcacctc |
432 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
19950596 |
gatcttccctcacctc |
19950581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 19848871 - 19848442
Alignment:
| Q |
8 |
ccaagaatatgataaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttct |
107 |
Q |
| |
|
||||||| | |||||||||||| |||||| | ||| ||||||||||||||||| |||||||| | ||| ||||| || ||||| | | ||||||||||| |
|
|
| T |
19848871 |
ccaagaacaggataaccccctagaaccatgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatttgtattaggacaccatttct |
19848772 |
T |
|
| Q |
108 |
caacaaccccaaatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaattt |
207 |
Q |
| |
|
|||| ||||||| ||||||||| |||| ||| |||| | | ||||| || ||||||||| |||||||| |||||||||||||||||||||||| | || |
|
|
| T |
19848771 |
caactaccccaactagcaagttttgatttttatttaagtagcacttagtggccataatagcatcaaagattccaactttcttccacacagattcatagtt |
19848672 |
T |
|
| Q |
208 |
gggtttaagttgatcaacccaataaacccatttttctgttacggggcgtggccatccaatgaagttgattttcaaaggccactcctctgggtcaaaaaga |
307 |
Q |
| |
|
||||||||| || ||||||| ||||||| |||| || | | || ||||||| ||||||||||||||||||| || | ||||| | || | |
|
|
| T |
19848671 |
ttgtttaagtttatgaacccaagaaaccca--tttcgtttgtgtgatgt-gccatcctctgaagttgattttcaaaggattatcatttgggttgagaaaa |
19848575 |
T |
|
| Q |
308 |
gaagatgggttaaacccagaaggtg---gttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcag |
404 |
Q |
| |
|
||||| ||||||||| | |||||| |||||||||||| |||||||||||||||||||||||| || ||||||| ||| | ||| |||||||| | |
|
|
| T |
19848574 |
gaagaagggttaaacttaaaaggtggttgttcttcaatggagtttgaaatgggtttgagaaaatgagctgttctgagttgtgggtgactatcaccagctg |
19848475 |
T |
|
| Q |
405 |
gtgaaagcatgtgatcttccttcacctccatca |
437 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| |
|
|
| T |
19848474 |
gtgaaagcatgaaatcttccctcacctccatca |
19848442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 19838256 - 19838036
Alignment:
| Q |
20 |
taaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaa |
119 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||| ||| |
|
|
| T |
19838256 |
taaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtattggtctcacagcaccatttctcaacaacttcaa |
19838157 |
T |
|
| Q |
120 |
atagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttg |
219 |
Q |
| |
|
||| |||||| | || ||| | ||| | || || |||||||| ||||| |||||||| ||||||||| |||| ||||||||| | || |||||||| | |
|
|
| T |
19838156 |
ataacaagtttttatttttatgaatgtagcatttagtactcattatagcatcaaagattccaactttcctccaaacagattcatactttggtttaagctt |
19838057 |
T |
|
| Q |
220 |
atcaacccaataaacccattt |
240 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
19838056 |
atcaacccaacaaacccattt |
19838036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 20016445 - 20016665
Alignment:
| Q |
20 |
taaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaa |
119 |
Q |
| |
|
||||| || |||||||||| ||| |||||||||||||| || ||| |||||||||| |||||||| ||||||| | ||||||||||||| ||||| || |
|
|
| T |
20016445 |
taaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcat |
20016544 |
T |
|
| Q |
120 |
atagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttg |
219 |
Q |
| |
|
|||||||||| |||| | || ||||| ||||||||| ||||||||||| |||||||| ||||| | |||||||||||||||| | || | |||||| || |
|
|
| T |
20016545 |
atagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccacacagattcatactttgttttaagctg |
20016644 |
T |
|
| Q |
220 |
atcaacccaataaacccattt |
240 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
20016645 |
atcaacccaacaaacccattt |
20016665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 20036840 - 20037072
Alignment:
| Q |
8 |
ccaagaatatgataaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttct |
107 |
Q |
| |
|
||||||| | ||||||| |||| |||||| | ||| |||||| ||| |||||| |||||||| | ||| |||||||| ||||||| |||||||||||| |
|
|
| T |
20036840 |
ccaagaacaggataacctcctagaaccatgatatcctccaaaatgactgttgcttcaccaaaggaaaacacaaatgtatttgtcttggaacaccatttct |
20036939 |
T |
|
| Q |
108 |
caacaaccccaaatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaattt |
207 |
Q |
| |
|
| ||||||||| |||||||||| |||||||| | |||| ||||||| || ||||||||| |||||||| |||||||||||||||||||||||| | || |
|
|
| T |
20036940 |
ccacaaccccatatagcaagttttgatctttatgtatgtaacacttagtggccataatagcatcaaagattccaactttcttccacacagattcatagtt |
20037039 |
T |
|
| Q |
208 |
gggtttaagttgatcaacccaataaacccattt |
240 |
Q |
| |
|
||||||||| || ||||||| |||||||||| |
|
|
| T |
20037040 |
ttgtttaagtttatgaacccaagaaacccattt |
20037072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 44 - 435
Target Start/End: Complemental strand, 20045971 - 20045574
Alignment:
| Q |
44 |
tccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaaatagcaagttatgatctttcttta |
143 |
Q |
| |
|
||||| || ||||||| ||||||||| ||||||| |||||| ||||| ||||||||||||||||| |||||||| ||| ||||| |||| ||| | |
|
|
| T |
20045971 |
tccaaggttattgttgtctcaccaaagggaaaaataaatgtatttgtatcacaacaccatttctccacaaccccttgtagtaagttctgatttttaagaa |
20045872 |
T |
|
| Q |
144 |
tgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttgatcaacccaataaacccatttttc |
243 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| |||| ||||| |||| |||||||||| |
|
|
| T |
20045871 |
tgcaacactttgagttcataatagcttcaaagattccaacttccttccacaccgattcaaattttggtttgagtttatcaagccaactaacccatttt-- |
20045774 |
T |
|
| Q |
244 |
tgttacggggcgtggccatccaatgaagttgattttcaaaggccactcctctgggtcaaaaagagaagatg---------ggttaaacccagaaggtggt |
334 |
Q |
| |
|
|||| ||| | |||| ||| |||||||||||||||||||||| |||| ||| |||||| | |||||| |||||||| || || |||| |
|
|
| T |
20045773 |
tgtt-gagggtggcgccacccagtgaagttgattttcaaaggccattcctttggttcaaaatcaaaagatgatgaaaattggttaaactcaagagttggt |
20045675 |
T |
|
| Q |
335 |
tcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaagcatgtgatcttccttcacctcca |
434 |
Q |
| |
|
|| ||||| | |||| ||| |||||||| || || ||| |||| ||| |||||||||| |||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
20045674 |
tcatcaattgaatttgcaataggtttgagtaagtgagccgttctaagagttggttcactatcaccattaggtgaaagcataaaatcttccttcacctcca |
20045575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 19943588 - 19943371
Alignment:
| Q |
23 |
ccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaaata |
122 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||| ||||||||| |||| ||||| |||||||| |||||||||||||||||||||| |||| | | |
|
|
| T |
19943588 |
ccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctcaacaatcccacaaa |
19943489 |
T |
|
| Q |
123 |
gcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttgatc |
222 |
Q |
| |
|
||||| |||| ||| ||||||| | ||| ||||||| |||| ||||||||| | | |||| ||||| || |||||| ||||||| ||||||| || |
|
|
| T |
19943488 |
ccaagtcttgatttttaattatgcagctcttaatactcattataggttcaaagattctagcttttttccatactgattcatatttgggcttaagttcgtc |
19943389 |
T |
|
| Q |
223 |
aacccaataaacccattt |
240 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
19943388 |
aacccacttaacccattt |
19943371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 24840223 - 24840428
Alignment:
| Q |
23 |
ccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaaata |
122 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||||||| ||||||||| |||| || || |||||||| ||||||||||||||||||||||||||| | | |
|
|
| T |
24840223 |
ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa |
24840322 |
T |
|
| Q |
123 |
gcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttgatc |
222 |
Q |
| |
|
||||| || | ||| ||||||| | ||| |||||||| |||| ||||||||||| | |||| |||||||| |||||| ||||| | | ||||| ||| |
|
|
| T |
24840323 |
ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc |
24840422 |
T |
|
| Q |
223 |
aaccca |
228 |
Q |
| |
|
|||||| |
|
|
| T |
24840423 |
aaccca |
24840428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 26651902 - 26651685
Alignment:
| Q |
23 |
ccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaaata |
122 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| || |||| | | |
|
|
| T |
26651902 |
ccccccaaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaacaaagcaatttgtctcactacaccatttctcagaaatcccataaa |
26651803 |
T |
|
| Q |
123 |
gcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttgatc |
222 |
Q |
| |
|
||||| |||| |||| ||| || | ||| |||||||| |||| |||||||||||| |||| |||||||| |||||| | ||||| ||||||||||| |
|
|
| T |
26651802 |
ccaagtcttgatttttcattacgcggctcttagtactcattataggttcaaagatgccggcttttttccacactgattcatacttgggcttaagttgatc |
26651703 |
T |
|
| Q |
223 |
aacccaataaacccattt |
240 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
26651702 |
aacccacttaacccattt |
26651685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 19857943 - 19857723
Alignment:
| Q |
20 |
taaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttg-tctcacaacaccatttctcaacaacccca |
118 |
Q |
| |
|
|||||||| ||||||| |||||| || | ||| |||||||| |||||||| ||||| || ||||| || | ||||| |||||||||| |||||||||||| |
|
|
| T |
19857943 |
taaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaacccca |
19857844 |
T |
|
| Q |
119 |
aatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagtt |
218 |
Q |
| |
|
| | |||||| |||||||| |||||| || || |||||| ||||||| ||||| || || |||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
19857843 |
taaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagctttcttccacacagattcatattttggttgaagtt |
19857744 |
T |
|
| Q |
219 |
gatcaacccaataaacccatt |
239 |
Q |
| |
|
| |||||||| | |||||||| |
|
|
| T |
19857743 |
ggtcaacccacttaacccatt |
19857723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 20005229 - 20005329
Alignment:
| Q |
18 |
gataaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaacccc |
117 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||||||| ||||||||| |||| ||||| |||||||| |||||||||||||||||||||| ||| |
|
|
| T |
20005229 |
gataaccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctcaacaatccc |
20005328 |
T |
|
| Q |
118 |
a |
118 |
Q |
| |
|
| |
|
|
| T |
20005329 |
a |
20005329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 437
Target Start/End: Complemental strand, 19837940 - 19837830
Alignment:
| Q |
327 |
aaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaagcatgtgatcttcctt |
426 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||| ||||||||||| ||||||| ||| |||||| ||||||||| ||||||||||| ||||||| | |
|
|
| T |
19837940 |
aaggtggttcttcaatggagtttgcaataggtttaagaaaatgggcagttctgagtgttgcttcactatcaccagcaagtgaaagcatgaaatcttccct |
19837841 |
T |
|
| Q |
427 |
cacctccatca |
437 |
Q |
| |
|
||||||||||| |
|
|
| T |
19837840 |
cacctccatca |
19837830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 436
Target Start/End: Complemental strand, 19818113 - 19818004
Alignment:
| Q |
327 |
aaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaagcatgtgatcttcctt |
426 |
Q |
| |
|
|||||||||| ||||||| ||||| || || ||||||||||| || ||||||| |||| ||||||||||||||||||||||||||| |||||| | |
|
|
| T |
19818113 |
aaggtggttcatcaatggagtttgcaacaggcttgagaaaatgagcagttctgagtgttggatcactgtcaccagcaggtgaaagcatgaaatcttctct |
19818014 |
T |
|
| Q |
427 |
cacctccatc |
436 |
Q |
| |
|
||||||||| |
|
|
| T |
19818013 |
aacctccatc |
19818004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 435
Target Start/End: Original strand, 20016742 - 20016869
Alignment:
| Q |
311 |
gatgggttaaacccagaaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgt---caccagcaggtg |
407 |
Q |
| |
|
||||| ||||| ||| |||||| ||| | |||| |||||||||||||| | ||||||||| |||||||| ||| |||| ||| |||||||||||| |
|
|
| T |
20016742 |
gatggattaaaaccaaaaggtgattcatgaatgtaatttgaaatgggttttaaaaaatgggcagttctgagagttgcttcagtgtcaccaccagcaggtg |
20016841 |
T |
|
| Q |
408 |
aaagcatgtgatcttccttcacctccat |
435 |
Q |
| |
|
| |||||| ||||||| |||||||||| |
|
|
| T |
20016842 |
agagcatgaaatcttccctcacctccat |
20016869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 9814911 - 9814482
Alignment:
| Q |
18 |
gataaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaacccc |
117 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| | || || ||||||||||| ||||| |||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
9814911 |
gataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtcttacaacaccatttctcaacaacccc |
9814812 |
T |
|
| Q |
118 |
aaatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagt |
217 |
Q |
| |
|
| |||||||||| ||||||||| |||||| |||||||||||||| ||||| |||||||| || ||||||||||||| ||||||| | || ||||||||| |
|
|
| T |
9814811 |
atatagcaagttttgatctttcattatgcggcacttggtactcattatagcatcaaagatacctactttcttccacaaagattcatactttggtttaagt |
9814712 |
T |
|
| Q |
218 |
tgatcaacccaataaacccatttttctgttacggggcgtggccatccaatgaagttgattttcaaaggccactcctctgggtcaaa-----aaga----g |
308 |
Q |
| |
|
|||||||||||||||| |||||| ||| | ||| |||||||| |||| | || ||||||||||||||| | ||| ||||| |||| | |
|
|
| T |
9814711 |
tgatcaacccaataaatccatttctcttgt---gggtaacgccatccattgaaatggaatttcaaaggccactcatttggatcaaacacataagacaatg |
9814615 |
T |
|
| Q |
309 |
aagatgggttaaacccagaagg---tggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcagg |
405 |
Q |
| |
|
| ||||||||||| ||| |||| |||||| | ||||| |||||||||||||| |||||||| |||||||| ||| ||| |||||||| ||||| || |
|
|
| T |
9814614 |
atgatgggttaaaaccaaaaggtgatggttcatgaatggaatttgaaatgggttttagaaaatgagccattctaagagttgcttcactgtgaccagttgg |
9814515 |
T |
|
| Q |
406 |
tgaaagcatgtgatcttccttcacctccatcaa |
438 |
Q |
| |
|
||| | |||| ||||||| ||||||||||||| |
|
|
| T |
9814514 |
tgagatcatgaaatcttccctcacctccatcaa |
9814482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 435
Target Start/End: Original strand, 26355173 - 26355594
Alignment:
| Q |
20 |
taaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaa |
119 |
Q |
| |
|
|||||||| | |||||||||||| |||||| | || ||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
26355173 |
taacccccaagaaccataacatcctccaaacctaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgt |
26355272 |
T |
|
| Q |
120 |
atagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttg |
219 |
Q |
| |
|
| |||||||| |||| |||| ||||| || ||||||||||| ||||| ||||| || ||| |||||||||| || | |||| ||||| | |||||||| |
|
|
| T |
26355273 |
aaagcaagttttgatttttcagtatgcggcatttggtactcattatagcatcaaaaatcccagctttcttccaaaccggttcatatttgagcttaagttg |
26355372 |
T |
|
| Q |
220 |
atcaacccaataaacccattt---ttctgttacggggcgtggccatccaatgaagttgattttcaaaggccactcctctgggtcaaa-----aaga---- |
307 |
Q |
| |
|
|||||||||| || ||||||| || | || || |||| |||||||| |||||| | ||||||||||| | ||||||||| |||| |
|
|
| T |
26355373 |
atcaacccaacaaccccatttcggttgtttt------tgtcgccaaccaatgaacttgattgttaaaggccactcttttgggtcaaacacgtaagacatt |
26355466 |
T |
|
| Q |
308 |
gaagatgggttaaacccagaaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtg |
407 |
Q |
| |
|
|| ||||||||||| ||| ||||| |||| | ||||| |||||||||||||| ||||||||||| ||||||| | ||| |||||||| |||| | |||| |
|
|
| T |
26355467 |
gatgatgggttaaagccaaaaggttgttcatgaatggaatttgaaatgggttttagaaaatgggctattctgaaagttgcttcactgtgaccatctggtg |
26355566 |
T |
|
| Q |
408 |
aaagcatgtgatcttccttcacctccat |
435 |
Q |
| |
|
| |||||| ||||||| || ||||||| |
|
|
| T |
26355567 |
agagcatgaaatcttccctctcctccat |
26355594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 38435376 - 38435491
Alignment:
| Q |
18 |
gataaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaacccc |
117 |
Q |
| |
|
|||||||||| |||||||| | |||||| |||||||||||||| |||||| |||||| |||||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
38435376 |
gataaccccc-aaaaccatgatatcttcaaaagtgattgttgctacaccaagtggaaacacaaatgtattggtcttacaacaccatttctcaacaaccct |
38435474 |
T |
|
| Q |
118 |
aaatagcaagttatgat |
134 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
38435475 |
aaataacaagttatgat |
38435491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 438
Target Start/End: Original strand, 2319577 - 2319707
Alignment:
| Q |
311 |
gatgggttaaacccagaaggt---ggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtg |
407 |
Q |
| |
|
||||||||||| ||| ||||| ||||| | ||||| |||||||||||||| |||||||| |||||||| ||| ||| |||||||| ||||| |||| |
|
|
| T |
2319577 |
gatgggttaaaaccaaaaggtcatggttcataaatggaatttgaaatgggttttagaaaatgagccattctaagagttgcttcactgtgaccagttggtg |
2319676 |
T |
|
| Q |
408 |
aaagcatgtgatcttccttcacctccatcaa |
438 |
Q |
| |
|
| | |||| ||||||| ||||||||||||| |
|
|
| T |
2319677 |
agatcatgaaatcttccctcacctccatcaa |
2319707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 1717082 - 1716862
Alignment:
| Q |
24 |
cccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaaatag |
123 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| || |||||||| ||||| |||||||| |||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
1717082 |
cccctaaaaccataatatcctccaaagtgattgtggcttcaccaaaaggaaacacaaatgtatttgtctcacaacaccatttttcaacaatcccatataa |
1716983 |
T |
|
| Q |
124 |
caagttatgatctttctttat---gcaacacttggtactcataatagcttcaaagatgccaactttcttccacacagattcaaatttgggtttaagttga |
220 |
Q |
| |
|
|||||| |||| ||||||||| | ||||||||| ||||| |||||||||||||||||||||||||||||||| | |||| |||| ||||||||| | |
|
|
| T |
1716982 |
caagttttgatttttctttatacgacgacacttggtgctcattatagcttcaaagatgccaactttcttccacactgtttcatgtttgagtttaagttca |
1716883 |
T |
|
| Q |
221 |
tcaacccaataaacccatttt |
241 |
Q |
| |
|
|||||||| | | |||||||| |
|
|
| T |
1716882 |
tcaacccacttatcccatttt |
1716862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 435
Target Start/End: Complemental strand, 1716780 - 1716671
Alignment:
| Q |
326 |
gaaggtggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaagcatgtgatcttcct |
425 |
Q |
| |
|
||||||||||| ||||| | ||||| ||||||||||||||||||| |||||| |||||||| | |||| | |||||||||||||| ||||||| |
|
|
| T |
1716780 |
gaaggtggttcatcaatagagtttgctgtgggtttgagaaaatgggctgttctgaatgttggttcattctcacaaccaggtgaaagcatgaaatcttccc |
1716681 |
T |
|
| Q |
426 |
tcacctccat |
435 |
Q |
| |
|
|||||||||| |
|
|
| T |
1716680 |
tcacctccat |
1716671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 22652334 - 22652454
Alignment:
| Q |
20 |
taaccccctaaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaa |
119 |
Q |
| |
|
|||||| |||||| |||||||||||| || ||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
22652334 |
taaccctctaaaatcataacatcttctaaggtgatagttgcctcaccaaatggaaacacaaatgagtttgtctcacagcaccatttctcaacaaccccaa |
22652433 |
T |
|
| Q |
120 |
atagcaagttatgatctttct |
140 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
22652434 |
atagcaagttatgatctttct |
22652454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 336 - 437
Target Start/End: Original strand, 22652457 - 22652558
Alignment:
| Q |
336 |
cttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaagcatgtgatcttccttcacctccat |
435 |
Q |
| |
|
||||||||||||||| || |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22652457 |
cttcaatggtgtttgcaacttgtttaagaaaattggccattctgagaatgggttcactgtcaccagcaggtgaaagcatgtgatcttccttcatctccat |
22652556 |
T |
|
| Q |
436 |
ca |
437 |
Q |
| |
|
|| |
|
|
| T |
22652557 |
ca |
22652558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 34408342 - 34408507
Alignment:
| Q |
29 |
aaaaccataacatcttccaaagtgattgttgcctcaccaaatggaaaa-acaaatgtgtttgtctcacaacaccatttctcaacaacccca-aatagcaa |
126 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| | ||||| || | |||| ||||| || ||||||||||||||| ||| ||| |||| || | ||| | || |
|
|
| T |
34408342 |
aaaaccatcacatcatccaaagtgattgttccatcacctaaagaaaaacacaaaggtatttgtctcacaacactattactcgacaatcctataatcg-aa |
34408440 |
T |
|
| Q |
127 |
gttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccac |
193 |
Q |
| |
|
|| |||| |||||||||||||| || |||||||| ||||||| ||||||| ||| |||||||||| |
|
|
| T |
34408441 |
gtcttgatttttctttatgcaactctaagtactcattatagctttaaagatgtcaattttcttccac |
34408507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 438
Target Start/End: Original strand, 45887590 - 45887720
Alignment:
| Q |
311 |
gatgggttaaacccagaaggt---ggttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtg |
407 |
Q |
| |
|
||||||||||| ||| ||||| ||||| | ||||| |||||||||||||| |||||||| |||||||| ||| ||| |||||||| ||||| |||| |
|
|
| T |
45887590 |
gatgggttaaaaccaaaaggtcatggttcataaatggaatttgaaatgggttttagaaaatgagccattctaagagttgcttcactgtgaccagttggtg |
45887689 |
T |
|
| Q |
408 |
aaagcatgtgatcttccttcacctccatcaa |
438 |
Q |
| |
|
| | |||| ||||||| ||||||||||||| |
|
|
| T |
45887690 |
agatcatgaaatcttccctcacctccatcaa |
45887720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 47331648 - 47331557
Alignment:
| Q |
347 |
tttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaagcatgtgatcttccttcacctccatcaa |
438 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||| ||| |||||||||||||| ||||| | |||| ||||||| |||||| |||||| |
|
|
| T |
47331648 |
tttgaaatgggttttagaaaatgagccattctaagagttgcttcactgtcaccagttggtgagatcatgaaatcttccctcaccttcatcaa |
47331557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 12581239 - 12581336
Alignment:
| Q |
338 |
tcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaagcatgtgatcttccttcacctccat |
435 |
Q |
| |
|
||||||| |||| ||| |||||||| |||||||| || | ||| |||||||||| |||||| ||| |||||||||| || ||||||||||||||| |
|
|
| T |
12581239 |
tcaatggaatttgcaataggtttgagtaaatgggctgttttaagagttggttcactatcaccaacagttgaaagcatgaaattttccttcacctccat |
12581336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 12497056 - 12497153
Alignment:
| Q |
338 |
tcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaagcatgtgatcttccttcacctccat |
435 |
Q |
| |
|
||||||| |||| ||| |||||||| ||||||| || | ||| |||||||||| |||||| ||| |||||||||| || ||||||||||||||| |
|
|
| T |
12497056 |
tcaatggaatttgcaataggtttgagtaaatgggttgttttaagagttggttcactatcaccaacagttgaaagcatgcaatattccttcacctccat |
12497153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 12520921 - 12521018
Alignment:
| Q |
338 |
tcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtgaaagcatgtgatcttccttcacctccat |
435 |
Q |
| |
|
||||||| |||| ||| |||||||| ||||||| || | ||| |||||||||| |||||| ||| |||||||||| || ||||||||||||||| |
|
|
| T |
12520921 |
tcaatggaatttgcaataggtttgagtaaatgggttgttttaagagttggttcactatcaccaacagttgaaagcatgcaatattccttcacctccat |
12521018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 435
Target Start/End: Original strand, 55864569 - 55864696
Alignment:
| Q |
311 |
gatgggttaaacccagaaggtg---gttcttcaatggtgtttgaaatgggtttgagaaaatgggccattctgagaattggttcactgtcaccagcaggtg |
407 |
Q |
| |
|
||||||||||| ||| |||||| |||| | ||||| |||||||||||||| |||||||| | |||||| ||| ||| |||||||| ||||| |||| |
|
|
| T |
55864569 |
gatgggttaaaaccaaaaggtgatggttcatgaatggaatttgaaatgggttttagaaaatgagtcattctaagagttgcttcactgtgaccagttggtg |
55864668 |
T |
|
| Q |
408 |
aaagcatgtgatcttccttcacctccat |
435 |
Q |
| |
|
| | |||| ||||||| |||||||||| |
|
|
| T |
55864669 |
agatcatgaaatcttccctcacctccat |
55864696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 6398107 - 6398047
Alignment:
| Q |
46 |
caaagtgattgttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttc |
106 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| ||||||||||| | ||| ||||||||| |
|
|
| T |
6398107 |
caaagttattgttgcctcaccaaagggaaaaaggaatgtgtttgtattacatcaccatttc |
6398047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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