View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_14 (Length: 457)
Name: NF15673_low_14
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 18406847 - 18407288
Alignment:
| Q |
1 |
tcttcttattatcagcagcagccacaacagtttccttactaacatactgactaaaatcgaacgtttcaggtataatcggaggagtagaacttcgaatcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18406847 |
tcttcttattatcagcagcagccacaacagtttccttactaacatactgactaaaatcgaacgtttcaggtataatcggaggagtagaacttcgaatcaa |
18406946 |
T |
|
| Q |
101 |
agcccaattcacaccttcgaaaaatggatgttgtttaatctcagtagcacctcttttataagcaattctcttatgaggctctttaaccaacaaccctcta |
200 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18406947 |
agcccaattaacaccttcgaaaaatggatgttgtttaatctcagtagcacctcttttataagcaattctcttatgaggctctttaaccaacaaccctcta |
18407046 |
T |
|
| Q |
201 |
ataagatccctcgctaccggactagcggaaggatggtcaggaaaccttaaaggctgccctacaacattaaaaagcgttgctcggtttccattacctttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18407047 |
ataagatccctcgctaccggactagcggaaggatggtcaggaaaccttaaaggctgccctacaacattaaaaagcgttgctcggtttccattacctttaa |
18407146 |
T |
|
| Q |
301 |
acggtgttgttccgtataaaagctcgtataaaaatatgccaaaagtccaccaatcaacagcactaccgtgtccttcaccacgcacgatttctggagcaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18407147 |
acggtgttgttccgtataaaagctcgtataaaaatatgccaaaagtccaccaatcaacagcactaccgtgtccttcaccacgcacgatttctggagcaag |
18407246 |
T |
|
| Q |
401 |
atactcatgtgttccaacgaatgacattgatcggacattagt |
442 |
Q |
| |
|
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|
| T |
18407247 |
atactcatgtgttccaacgaatgacattgatcggacattagt |
18407288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 101 - 432
Target Start/End: Original strand, 26569226 - 26569557
Alignment:
| Q |
101 |
agcccaattcacaccttcgaaaaatggatgttgtttaatctcagtagcacctcttttataagcaattctcttatgaggctctttaaccaacaaccctcta |
200 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||| || || || || ||||||||||| ||||||||||| ||||| || |||| |||||| |||||| |
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|
| T |
26569226 |
agcccaattcactccttcaaaaaatggatgctgttttatttctgttgctcctcttttatatgcaattctcttctgaggttccttaatcaacaatcctcta |
26569325 |
T |
|
| Q |
201 |
ataagatccctcgctaccggactagcggaaggatggtcaggaaaccttaaaggctgccctacaacattaaaaagcgttgctcggtttccattacctttaa |
300 |
Q |
| |
|
|||||||| | || || |||||| |||| || ||||||||||| ||||| || |||||||| ||||| || ||| || ||| ||||||| |
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|
| T |
26569326 |
ataagatctttagccacaggactaatttgaggactatctggaaaccttaatggctgtccaacaacattgaaaagtgtcgctttgtatcctgcgcctttaa |
26569425 |
T |
|
| Q |
301 |
acggtgttgttccgtataaaagctcgtataaaaatatgccaaaagtccaccaatcaacagcactaccgtgtccttcaccacgcacgatttctggagcaag |
400 |
Q |
| |
|
| || |||| |||| || || || || || ||||| || |||||||||||||| || ||||||||||||||||| || | |||||| || || || |
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|
| T |
26569426 |
aaggcgttgcaccgtgcaacagttcatacaagaatattccgaaagtccaccaatctaccgcactaccgtgtccttctcctttgatgatttcaggtgcgag |
26569525 |
T |
|
| Q |
401 |
atactcatgtgttccaacgaatgacattgatc |
432 |
Q |
| |
|
|||||| ||||| || || ||||||||||||| |
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|
| T |
26569526 |
atactcgtgtgtgcctacaaatgacattgatc |
26569557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 9940398 - 9940465
Alignment:
| Q |
96 |
atcaaagcccaattcacaccttcgaaaaatggatgttgtttaatctcagtagcacctcttttataagc |
163 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| ||||||||||||||||| || || |||||||||||||| |
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|
| T |
9940398 |
atcaaggcccaattcacgccttcaaaaaagggatgttgtttaatctcggttgcgcctcttttataagc |
9940465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 9940625 - 9940681
Alignment:
| Q |
323 |
ctcgtataaaaatatgccaaaagtccaccaatcaacagcactaccgtgtccttcacc |
379 |
Q |
| |
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|||||||| ||| || ||| |||||||||||||||| ||||| ||||| |||||||| |
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|
| T |
9940625 |
ctcgtatagaaagattccataagtccaccaatcaactgcactgccgtgaccttcacc |
9940681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 12233767 - 12233825
Alignment:
| Q |
318 |
aaaagctcgtataaaaatatgccaaaagtccaccaatcaacagcactaccgtgtccttc |
376 |
Q |
| |
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|||||||||||||| ||||| ||||| |||||||| || |||||||| ||||| ||||| |
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| T |
12233767 |
aaaagctcgtataagaatataccaaatgtccaccagtctacagcactgccgtgaccttc |
12233825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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