View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15673_low_15 (Length: 454)

Name: NF15673_low_15
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15673_low_15
NF15673_low_15
[»] chr2 (33 HSPs)
chr2 (12-433)||(42408969-42409390)
chr2 (36-79)||(24097815-24097858)
chr2 (29-79)||(9395130-9395180)
chr2 (29-79)||(42621395-42621445)
chr2 (19-79)||(9556229-9556289)
chr2 (9-73)||(15377745-15377809)
chr2 (36-79)||(40158725-40158768)
chr2 (25-74)||(36863650-36863699)
chr2 (19-76)||(42817399-42817456)
chr2 (28-79)||(4026816-4026867)
chr2 (16-79)||(9477939-9478002)
chr2 (28-79)||(10567056-10567107)
chr2 (36-79)||(15977992-15978035)
chr2 (36-79)||(35379036-35379079)
chr2 (33-79)||(1939352-1939398)
chr2 (29-79)||(5759595-5759645)
chr2 (25-79)||(10563578-10563632)
chr2 (29-79)||(33319832-33319882)
chr2 (29-79)||(36852472-36852522)
chr2 (29-74)||(10884546-10884591)
chr2 (12-73)||(13869121-13869182)
chr2 (38-79)||(16398123-16398164)
chr2 (31-79)||(3227703-3227751)
chr2 (36-76)||(6993747-6993787)
chr2 (12-72)||(8017417-8017477)
chr2 (29-73)||(13736319-13736363)
chr2 (19-79)||(18179260-18179320)
chr2 (27-79)||(33391027-33391079)
chr2 (12-79)||(34339889-34339956)
chr2 (43-79)||(36395307-36395343)
chr2 (19-79)||(39983332-39983392)
chr2 (29-65)||(40435015-40435051)
chr2 (32-76)||(43600708-43600752)
[»] chr4 (22 HSPs)
chr4 (298-423)||(25414649-25414774)
chr4 (25-79)||(18628563-18628617)
chr4 (36-79)||(8468955-8468998)
chr4 (32-78)||(4191721-4191767)
chr4 (29-79)||(7694030-7694080)
chr4 (29-79)||(27721717-27721767)
chr4 (29-79)||(53673678-53673728)
chr4 (19-76)||(36722692-36722749)
chr4 (19-79)||(43824273-43824333)
chr4 (36-79)||(11802541-11802584)
chr4 (37-79)||(825510-825552)
chr4 (39-77)||(10194716-10194754)
chr4 (29-79)||(43932435-43932485)
chr4 (29-79)||(47800623-47800673)
chr4 (29-79)||(55414440-55414490)
chr4 (12-57)||(24091446-24091491)
chr4 (31-79)||(4500848-4500896)
chr4 (19-51)||(9908074-9908106)
chr4 (19-79)||(11158377-11158437)
chr4 (19-79)||(29601028-29601088)
chr4 (35-79)||(50004164-50004208)
chr4 (25-73)||(56480344-56480392)
[»] chr1 (26 HSPs)
chr1 (25-79)||(35179135-35179189)
chr1 (29-76)||(11639439-11639486)
chr1 (38-78)||(27807105-27807145)
chr1 (19-79)||(41853787-41853847)
chr1 (29-79)||(4700086-4700136)
chr1 (29-79)||(32113658-32113708)
chr1 (27-75)||(51929799-51929847)
chr1 (12-79)||(15361696-15361763)
chr1 (36-79)||(25479588-25479631)
chr1 (25-64)||(51957418-51957457)
chr1 (29-79)||(7137018-7137068)
chr1 (29-79)||(7472311-7472361)
chr1 (14-76)||(16322834-16322896)
chr1 (43-77)||(26916215-26916249)
chr1 (19-77)||(44422689-44422747)
chr1 (34-79)||(1565152-1565197)
chr1 (22-79)||(4576798-4576855)
chr1 (38-79)||(10199428-10199469)
chr1 (19-76)||(28482256-28482313)
chr1 (36-77)||(37241844-37241885)
chr1 (31-76)||(38867854-38867899)
chr1 (25-70)||(48282130-48282175)
chr1 (19-51)||(36581588-36581620)
chr1 (39-79)||(37593704-37593744)
chr1 (36-76)||(38651454-38651494)
chr1 (15-79)||(39347987-39348051)
[»] chr5 (25 HSPs)
chr5 (19-79)||(37588380-37588440)
chr5 (19-79)||(35553208-35553268)
chr5 (19-79)||(37526219-37526279)
chr5 (36-79)||(27565370-27565413)
chr5 (19-74)||(36639512-36639567)
chr5 (21-79)||(1550889-1550947)
chr5 (28-78)||(7319029-7319079)
chr5 (39-79)||(3970700-3970740)
chr5 (19-79)||(18875351-18875411)
chr5 (35-79)||(36638753-36638797)
chr5 (20-79)||(8651373-8651431)
chr5 (36-79)||(15074769-15074812)
chr5 (32-79)||(36774727-36774774)
chr5 (45-79)||(3504760-3504794)
chr5 (30-80)||(3977309-3977359)
chr5 (25-67)||(6582864-6582906)
chr5 (25-79)||(41957471-41957525)
chr5 (30-79)||(4014444-4014493)
chr5 (38-79)||(10125738-10125779)
chr5 (30-79)||(17258903-17258952)
chr5 (19-79)||(37690656-37690717)
chr5 (19-79)||(7319396-7319456)
chr5 (35-79)||(13604869-13604913)
chr5 (19-79)||(16328856-16328915)
chr5 (19-79)||(16863770-16863830)
[»] chr3 (18 HSPs)
chr3 (19-79)||(14548741-14548801)
chr3 (29-79)||(34254828-34254878)
chr3 (25-79)||(40665425-40665479)
chr3 (20-78)||(48286831-48286889)
chr3 (29-78)||(2719468-2719517)
chr3 (30-79)||(41633361-41633410)
chr3 (35-79)||(3845582-3845626)
chr3 (36-76)||(8933794-8933834)
chr3 (36-79)||(1816590-1816633)
chr3 (32-79)||(44284100-44284147)
chr3 (29-79)||(20502088-20502138)
chr3 (25-74)||(24158528-24158577)
chr3 (14-79)||(48807693-48807758)
chr3 (23-75)||(21661508-21661560)
chr3 (19-79)||(24280701-24280761)
chr3 (35-79)||(24887303-24887347)
chr3 (35-79)||(48528562-48528606)
chr3 (36-76)||(51510216-51510256)
[»] chr7 (25 HSPs)
chr7 (25-79)||(44821955-44822009)
chr7 (32-79)||(7244683-7244730)
chr7 (16-79)||(21453281-21453344)
chr7 (29-78)||(6601367-6601416)
chr7 (14-79)||(24363621-24363686)
chr7 (21-73)||(30723065-30723117)
chr7 (19-79)||(33709438-33709498)
chr7 (26-73)||(29363515-29363562)
chr7 (36-79)||(39505963-39506006)
chr7 (27-78)||(40252128-40252179)
chr7 (19-79)||(46082024-46082086)
chr7 (29-79)||(514767-514817)
chr7 (29-79)||(25596033-25596083)
chr7 (32-66)||(27517314-27517348)
chr7 (36-74)||(39542325-39542363)
chr7 (29-71)||(47559629-47559671)
chr7 (14-79)||(25507334-25507399)
chr7 (25-78)||(28691856-28691909)
chr7 (36-77)||(46104589-46104630)
chr7 (36-77)||(48917368-48917409)
chr7 (30-74)||(19530185-19530229)
chr7 (35-79)||(27378848-27378892)
chr7 (29-73)||(33645987-33646030)
chr7 (12-76)||(40689009-40689073)
chr7 (29-73)||(47941323-47941367)
[»] chr8 (20 HSPs)
chr8 (14-79)||(31862478-31862543)
chr8 (31-76)||(35220746-35220791)
chr8 (19-79)||(11795082-11795142)
chr8 (32-79)||(20672753-20672800)
chr8 (29-79)||(27028831-27028881)
chr8 (37-79)||(27754412-27754454)
chr8 (25-75)||(34551116-34551166)
chr8 (19-79)||(12361182-12361242)
chr8 (35-79)||(44236843-44236887)
chr8 (28-79)||(9700000-9700051)
chr8 (25-76)||(10075574-10075625)
chr8 (19-74)||(13652205-13652260)
chr8 (19-74)||(13710848-13710903)
chr8 (12-79)||(39268524-39268591)
chr8 (37-79)||(1433556-1433598)
chr8 (36-74)||(10923603-10923641)
chr8 (29-79)||(11494146-11494196)
chr8 (29-79)||(28769359-28769409)
chr8 (36-108)||(40157519-40157585)
chr8 (30-70)||(25097387-25097427)
[»] chr6 (15 HSPs)
chr6 (38-79)||(32387075-32387116)
chr6 (19-79)||(1275139-1275199)
chr6 (19-79)||(33787765-33787825)
chr6 (36-79)||(32386583-32386626)
chr6 (17-79)||(3168281-3168343)
chr6 (29-76)||(28641772-28641819)
chr6 (25-79)||(8364996-8365050)
chr6 (10-76)||(28088245-28088311)
chr6 (29-79)||(32386126-32386176)
chr6 (19-79)||(4247081-4247141)
chr6 (27-79)||(6647385-6647437)
chr6 (36-76)||(31812036-31812076)
chr6 (35-79)||(32171403-32171447)
chr6 (19-79)||(32171457-32171517)
chr6 (19-79)||(32848616-32848676)


Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 433
Target Start/End: Complemental strand, 42409390 - 42408969
Alignment:
Q  12 attattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaagttgaagacaacttatacacatatcataaact 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42409390 attattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaagttgaagacaacttatacacatatcataaact 42409291  T
Q  112 caaataaggtaatccacacatgccttcaaagagtctcacaaatgctaatactggtagataaactcaaataaatcggtccaaagatgctcttagacaattg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42409290 caaataaggtaatccacacatgccttcaaagagtctcacaaatgctaatactagtagataaactcaaataaatcggtccaaagatgctcttagacaattg 42409191  T
Q  212 tttatctgatgaattttgtattaactttcctataactgttacctattatgttcattcctccttttgtttcacctgtatgtacaaacaggacaagacagct 311  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42409190 tttatctgatgaattttgtattaactttcctataactgttacttattatgttcatttctccttttgtttcacctgtatgtacaaacaggacaagacagct 42409091  T
Q  312 ttcatattttgcgttgaagatagggcactcttctgtgaggattgtgacgaatcgattcatttacctggaagcctttctgcaaatcaccagcgcttccttg 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42409090 ttcatattttgcgttgaagatagggcactcttctgtgaggattgtgacgagtcgattcatttacctggaagcctttctgcaaatcaccagcgcttccttg 42408991  T
Q  412 cgaccggtatccaagtggccat 433  Q
    ||||||||||||||||||||||    
T  42408990 cgaccggtatccaagtggccat 42408969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 24097815 - 24097858
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  24097815 tgttttcataagttatcctggagagcttatgaaaataagctgaa 24097858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 9395130 - 9395180
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  9395130 tataagctgttttcattagttattctgtagagcttatgaaaataagctgaa 9395180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 42621445 - 42621395
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  42621445 tataagctgttttcataagttattctggagaacttgtgaaaataagctgaa 42621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 9556229 - 9556289
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||| ||||||||||||||||||| ||| || || |||||||||||||||| ||||    
T  9556229 tcatacaagctataaactgttttcataagctatcctagaaagcttatgaaaataagttgaa 9556289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 15377745 - 15377809
Alignment:
Q  9 tagattattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataa 73  Q
    |||||| || ||||| ||||||||| ||||||||||||| |||||||  ||||||||||||||||    
T  15377745 tagattgttttcatataagttataagctgttttcataagctattctgaggagcttatgaaaataa 15377809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 40158725 - 40158768
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||||||||||||||||||| || |||||||||    
T  40158725 tgttttcataagttattctggagagcttatgtaattaagctgaa 40158768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 36863699 - 36863650
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataag 74  Q
    |||||||||| |||||||||||| |||  |||||||||||||||||||||    
T  36863699 aagttataaattgttttcataagctatcttggagagcttatgaaaataag 36863650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 42817456 - 42817399
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    ||||| |||| |||||||||||||||||| ||||||| |||||||||| || ||||||    
T  42817456 tcatataagtaataaactgttttcataagctattctgaagagcttatggaagtaagct 42817399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 4026816 - 4026867
Alignment:
Q  28 ttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||| |||||||||||| |||| ||| ||| |||||||||||||||||||    
T  4026816 ttataagctgttttcataaattatcctgaagaacttatgaaaataagctgaa 4026867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 9477939 - 9478002
Alignment:
Q  16 ttctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| || |||||||||  |||||||||||| ||| |||||||| ||||||||||||| ||||    
T  9477939 ttctcgtataagttataagttgttttcataagctatcctggagaggttatgaaaataagttgaa 9478002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 10567056 - 10567107
Alignment:
Q  28 ttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||| |||||  ||||||||||||||| ||||||| |||||||    
T  10567056 ttataaactgtttccataaactattctggagagcttgtgaaaattagctgaa 10567107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 15977992 - 15978035
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||| |||| ||||||| ||||||||||||||||||    
T  15977992 tgttttcataagctattttggagagattatgaaaataagctgaa 15978035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 35379079 - 35379036
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||| |||  ||||||||||||||||||||||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaa 35379036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 1939398 - 1939352
Alignment:
Q  33 aactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||| ||| |||||||||||||| ||||||| ||||    
T  1939398 aactgttttcataagctatactggagagcttatggaaataagttgaa 1939352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 5759645 - 5759595
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||| |||||||||| | || |||||||||||||||    
T  5759645 tataagctgttttcataagctattctggagggtttgtgaaaataagctgaa 5759595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 10563632 - 10563578
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||  |||||||||||| ||| ||| |||||||| ||||||||||||||    
T  10563632 aagttataagttgttttcataagctatgctgaagagcttaagaaaataagctgaa 10563578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 33319882 - 33319832
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||||||  |||  |||||| |||||||||||||||||||    
T  33319882 tataaactgttttcataaactatcttggagaacttatgaaaataagctgaa 33319832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 36852472 - 36852522
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||||||| |||  ||||||||||||| |||||| |||||    
T  36852472 tataaactgttttcataagctatcttggagagcttatggaaataatctgaa 36852522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 10884591 - 10884546
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataag 74  Q
    ||||| ||||||||||||| ||| || |||||||||||||||||||    
T  10884591 tataagctgttttcataagctatcctagagagcttatgaaaataag 10884546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 13869182 - 13869121
Alignment:
Q  12 attattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataa 73  Q
    |||||| ||||  ||| ||||| ||||||||||||||||| ||||||| || ||||||||||    
T  13869182 attattttcatctaagctataagctgttttcataagttatcctggagaactaatgaaaataa 13869121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 16398123 - 16398164
Alignment:
Q  38 ttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||  |||||| |||||||||||||||||||    
T  16398123 ttttcataagttatgttggagaacttatgaaaataagctgaa 16398164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 3227751 - 3227703
Alignment:
Q  31 taaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| |||||||||||| |||| ||||||| || |||||||||||||||    
T  3227751 taaattgttttcataagctattttggagagattttgaaaataagctgaa 3227703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 6993787 - 6993747
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagct 76  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  6993787 tgttttcataagctatgcttgagagcttatgaaaataagct 6993747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 8017417 - 8017477
Alignment:
Q  12 attattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaata 72  Q
    |||||| ||||| ||| | ||||||||||||||||| |||  |||||| ||||||||||||    
T  8017417 attattttcatataagctgtaaactgttttcataagctatcttggagaacttatgaaaata 8017477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 13736363 - 13736319
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataa 73  Q
    ||||| ||||||||||||| ||| || ||||||||||||||||||    
T  13736363 tataagctgttttcataagctatactagagagcttatgaaaataa 13736319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 18179320 - 18179260
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| ||||| ||| ||||||||| ||| ||||||| |||| ||||||||||||||    
T  18179320 tcatataagctataagctgctttcataagctatcctggagaacttacgaaaataagctgaa 18179260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 33391027 - 33391079
Alignment:
Q  27 gttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||| ||||||||||| |||||||| || ||||| || ||||||||||||    
T  33391027 gttataagctgttttcatatgttattcttgaaagcttgtggaaataagctgaa 33391079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 34339889 - 34339956
Alignment:
Q  12 attattctcatacaagttataaactgttttcataagttattc-tggagagcttatgaaaataagctgaa 79  Q
    |||||| || || ||| |||||||| |||||||||| ||||| ||||||||||| ||||||||||||||    
T  34339889 attattttcgtataaggtataaactattttcataag-tattcttggagagcttaagaaaataagctgaa 34339956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 36395343 - 36395307
Alignment:
Q  43 ataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  36395343 ataagctattctggagagcttatgaaaattagctgaa 36395307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 39983332 - 39983392
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| |||||  |||||||||||| ||| |||||||||| |||||||||| |||||    
T  39983332 tcatataagctataagttgttttcataagctatcctggagagctaatgaaaataaactgaa 39983392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 40435051 - 40435015
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttat 65  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  40435051 tataagctgttttcataagttatactggagagcttat 40435015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 43600708 - 43600752
Alignment:
Q  32 aaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    ||||||||||||||||||||| || |||| |||||||| ||||||    
T  43600708 aaactgttttcataagttattatgaagagtttatgaaactaagct 43600752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 298 - 423
Target Start/End: Complemental strand, 25414774 - 25414649
Alignment:
Q  298 aggacaagacagctttcatattttgcgttgaagatagggcactcttctgtgaggattgtgacgaatcgattcatttacctggaagcctttctgcaaatca 397  Q
    |||| ||| |||||||||||||||| |||||||| || ||||| |||||  |||| || || ||| | |||||| || |||| || ||||||| ||| ||    
T  25414774 aggataagccagctttcatattttgtgttgaagacagagcactgttctgcaaggactgcgatgaaccaattcatgtagctggtagtctttctggaaacca 25414675  T
Q  398 ccagcgcttccttgcgaccggtatcc 423  Q
    ||||||||||||||| ||||||||||    
T  25414674 ccagcgcttccttgctaccggtatcc 25414649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 18628617 - 18628563
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  18628617 aagttataaactgttttcataagttatcttggagagcttatggaaataagctgaa 18628563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 8468955 - 8468998
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||||||| |||||||||||||||||| |||||    
T  8468955 tgttttcataagttattctagagagcttatgaaaataatctgaa 8468998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 4191721 - 4191767
Alignment:
Q  32 aaactgttttcataagttattctggagagcttatgaaaataagctga 78  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||||    
T  4191721 aaactgttttcataagttatcctggagagcgtatggaaataagctga 4191767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 7694080 - 7694030
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||    
T  7694080 tataagctgttttcataagttatcctggagagtttatggaaataagctgaa 7694030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 27721717 - 27721767
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||||||| |||||||||||  ||||||||||||||    
T  27721717 tataagctgttttcataagttatcctggagagcttgcgaaaataagctgaa 27721767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 53673728 - 53673678
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||||||| |||  ||||||||||||| ||||||||||||    
T  53673728 tataaactgttttcataagctatcttggagagcttatgtaaataagctgaa 53673678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 36722749 - 36722692
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    ||||| |||||||||  |||||| ||||||||| ||| ||||||||||||||||||||    
T  36722749 tcatataagttataagttgttttgataagttatcctgaagagcttatgaaaataagct 36722692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 43824273 - 43824333
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||| || ||||| |||||||| ||||| |||||||| ||||||||||||    
T  43824273 tcatataagttataagcttttttcgtaagttatcctggaaagcttatggaaataagctgaa 43824333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 11802541 - 11802584
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||| |||| |||||||||||||| |||||||||||    
T  11802541 tgttttcataagctattatggagagcttatgagaataagctgaa 11802584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 825552 - 825510
Alignment:
Q  37 gttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  825552 gttttcataagctattttggagaacttatgaaaataagctgaa 825510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 10194754 - 10194716
Alignment:
Q  39 tttcataagttattctggagagcttatgaaaataagctg 77  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  10194754 tttcataagttatcttggagagcttatgaaaataagctg 10194716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 43932435 - 43932485
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||| |||||||||||||||||| ||| ||| |||||||||| ||||    
T  43932435 tataaactattttcataagttattctgaagaacttgtgaaaataagatgaa 43932485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 47800623 - 47800673
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||| |||  || |||||||||||||||||||||||    
T  47800623 tataagctgttttcataagctatcttgaagagcttatgaaaataagctgaa 47800673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 55414490 - 55414440
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||| ||||||||||||||||  |||||| |||||||||||||| ||||    
T  55414490 tataaattgttttcataagttatcttggagaacttatgaaaataagttgaa 55414440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 24091446 - 24091491
Alignment:
Q  12 attattctcatacaagttataaactgttttcataagttattctgga 57  Q
    |||||| ||||| ||| ||||||||||||||||||||||| |||||    
T  24091446 attattttcatataagctataaactgttttcataagttatcctgga 24091491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 4500848 - 4500896
Alignment:
Q  31 taaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| |||||||| ||| |||| ||||||| ||||||||||||||||||    
T  4500848 taaattgttttcaaaagctattttggagagattatgaaaataagctgaa 4500896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 9908074 - 9908106
Alignment:
Q  19 tcatacaagttataaactgttttcataagttat 51  Q
    ||||| |||||||||||||||||||||||||||    
T  9908074 tcatataagttataaactgttttcataagttat 9908106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 11158437 - 11158377
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||  |||||||||||| |||  | |||||||| || ||||||||||||    
T  11158437 tcatacaagttataagttgttttcataagctatcttagagagcttgtggaaataagctgaa 11158377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 29601088 - 29601028
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| |||| ||||| ||||||||||| | ||| || |||| |||||||||||||||||||    
T  29601088 tcatgcaagctataatctgttttcatatgctatcctagagaacttatgaaaataagctgaa 29601028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 50004208 - 50004164
Alignment:
Q  35 ctgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||| ||||||||  |||||| |||||||||||||||||||    
T  50004208 ctgttttcctaagttatcttggagaacttatgaaaataagctgaa 50004164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 56480344 - 56480392
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataa 73  Q
    ||||||||| ||||||||||||  |||  ||||||||||||||||||||    
T  56480344 aagttataagctgttttcataaactatcttggagagcttatgaaaataa 56480392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 35179135 - 35179189
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  35179135 aagttataagctgttttcataagttattatggagaacttatgaaaataagctgaa 35179189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 11639486 - 11639439
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||    
T  11639486 tataaactgtttgcataagttattctagagagcttatgaaaataagct 11639439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 27807105 - 27807145
Alignment:
Q  38 ttttcataagttattctggagagcttatgaaaataagctga 78  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  27807105 ttttcaaaagttattctggagagcttatgaaaataagctga 27807145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 41853787 - 41853847
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||| | |||||| ||||||||||| |||||||||| ||||||||| |||||    
T  41853787 tcatacaagttatgagctgtttccataagttattttggagagcttgtgaaaataaactgaa 41853847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 4700136 - 4700086
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||| ||||  ||| |||||||||||||||||||||||||||    
T  4700136 tataaactgtttttataaactatcctggagagcttatgaaaataagctgaa 4700086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 32113658 - 32113708
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||||||||||  ||||||  ||||||||||||||||||    
T  32113658 tataaactgttttcataagttatgttggagattttatgaaaataagctgaa 32113708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 51929847 - 51929799
Alignment:
Q  27 gttataaactgttttcataagttattctggagagcttatgaaaataagc 75  Q
    ||||||| ||||||||||||| |||||| ||||||||||| ||||||||    
T  51929847 gttataagctgttttcataagctattctagagagcttatggaaataagc 51929799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 15361696 - 15361763
Alignment:
Q  12 attattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||| ||||| ||| ||||| ||||||||||||| |||||| ||||| ||||| || |||||||||    
T  15361696 attattttcatataagctataagctgttttcataagatattcttgagagtttatggaattaagctgaa 15361763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 25479588 - 25479631
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||| ||| || ||||||||||||||||||||||||    
T  25479588 tgttttcataagctatcctagagagcttatgaaaataagctgaa 25479631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 51957457 - 51957418
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagctta 64  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  51957457 aagttataaattgttttcataagttattctggagaactta 51957418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 7137068 - 7137018
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||| |||  |||||| |||||||||||||||||||    
T  7137068 tataagctgttttcataagctatcttggagaacttatgaaaataagctgaa 7137018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 7472311 - 7472361
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| |||||| |||||| |||  ||||||||||||||||||||||||||    
T  7472311 tataagctgtttccataagctatcttggagagcttatgaaaataagctgaa 7472361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 16322834 - 16322896
Alignment:
Q  14 tattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    |||| ||||| ||||||||| ||||||||||| | |||| || |||||||||| |||||||||    
T  16322834 tattttcatagaagttataagctgttttcataggctattttgaagagcttatggaaataagct 16322896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 26916215 - 26916249
Alignment:
Q  43 ataagttattctggagagcttatgaaaataagctg 77  Q
    |||||||||||||||||||||||| ||||||||||    
T  26916215 ataagttattctggagagcttatggaaataagctg 26916249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 44422689 - 44422747
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctg 77  Q
    ||||| ||| ||||| || |||| ||||| ||| |||||||||||||||||||||||||    
T  44422689 tcatataagctataagctatttttataagctatcctggagagcttatgaaaataagctg 44422747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 1565197 - 1565152
Alignment:
Q  34 actgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||| ||||||||||  |||||||| |||||||||||||||||    
T  1565197 actgtttgcataagttatcttggagagcctatgaaaataagctgaa 1565152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 4576798 - 4576855
Alignment:
Q  22 tacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||| ||||||||||||| |||  || | | |||||||||||||||||||    
T  4576798 tacaagttataagctgttttcataagctatattgaataacttatgaaaataagctgaa 4576855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 10199469 - 10199428
Alignment:
Q  38 ttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||| |||| | ||||||||||||||||||||||||    
T  10199469 ttttcataagctattttagagagcttatgaaaataagctgaa 10199428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 28482313 - 28482256
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    ||||| ||| ||||| ||||||| |||||||||  ||||||||||| |||||||||||    
T  28482313 tcatataagctataagctgtttttataagttatcttggagagcttacgaaaataagct 28482256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 37241885 - 37241844
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctg 77  Q
    |||||||||||| ||| || ||||||||||||||||||||||    
T  37241885 tgttttcataagatatcctagagagcttatgaaaataagctg 37241844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 38867899 - 38867854
Alignment:
Q  31 taaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    |||||||||||||||||||||  || ||| ||||||||||||||||    
T  38867899 taaactgttttcataagttatcttgaagaacttatgaaaataagct 38867854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 48282130 - 48282175
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaa 70  Q
    ||||| |||||||||||||||||||||  || ||||||||||||||    
T  48282130 aagttttaaactgttttcataagttatgttgaagagcttatgaaaa 48282175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 36581588 - 36581620
Alignment:
Q  19 tcatacaagttataaactgttttcataagttat 51  Q
    |||||||||||||||||||||||||||| ||||    
T  36581588 tcatacaagttataaactgttttcataaattat 36581620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 37593744 - 37593704
Alignment:
Q  39 tttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||| |||| || |||||||||||||||||||||||    
T  37593744 tttcataagctattttgaagagcttatgaaaataagctgaa 37593704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 38651494 - 38651454
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagct 76  Q
    |||||||||||| ||| ||||||||||||| ||||||||||    
T  38651494 tgttttcataagctatcctggagagcttataaaaataagct 38651454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 39348051 - 39347987
Alignment:
Q  15 attctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||| |||||  |||||||||||  ||| ||| | |||||||| ||||||||||||    
T  39348051 attctcatacaagctataagttgttttcataaactatcctgcaaagcttatggaaataagctgaa 39347987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 37588440 - 37588380
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  37588440 tcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaa 37588380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 35553268 - 35553208
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| |||||||| |||||||| | |||||||||||||||||| ||||||||||||    
T  35553268 tcatataagctataaactattttcatacgctattctggagagcttatggaaataagctgaa 35553208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 37526279 - 37526219
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| |||||  |||||||||||||| |||||||||||||||| ||||||||||||    
T  37526279 tcatataagctataagttgttttcataagttgttctggagagcttatggaaataagctgaa 37526219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 27565413 - 27565370
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
T  27565413 tgttttaataagatattctggagagcttatgaaaataagctgaa 27565370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 36639512 - 36639567
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataag 74  Q
    |||||||||||||| |||||||||||||| |||  || ||||||||||||||||||    
T  36639512 tcatacaagttatagactgttttcataagctatcttgaagagcttatgaaaataag 36639567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 1550889 - 1550947
Alignment:
Q  21 atacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||| ||||| ||||||||||||||||| ||| ||||||||||| |||||| ||||    
T  1550889 atacaagctataagctgttttcataagttatactgaagagcttatgacaataagatgaa 1550947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 7319079 - 7319029
Alignment:
Q  28 ttataaactgttttcataagttattctggagagcttatgaaaataagctga 78  Q
    |||||||||||||||||||| |||  |||||| ||||||||||||||||||    
T  7319079 ttataaactgttttcataagctatcttggagaacttatgaaaataagctga 7319029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 3970740 - 3970700
Alignment:
Q  39 tttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  3970740 tttcataagctatactggagagcttatgaaaataagctgaa 3970700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 18875351 - 18875411
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||| ||||||| ||||| ||| |||||||||||||| ||| ||| ||||    
T  18875351 tcatacaagttataagctgttttaataagatatcctggagagcttatggaaacaagttgaa 18875411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 36638753 - 36638797
Alignment:
Q  35 ctgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||    
T  36638753 ctgttttcataagttatcctagagagcttatggaaataagctgaa 36638797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 8651431 - 8651373
Alignment:
Q  20 catacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| ||| ||||||||||||||||||| |||||||| ||||||||| ||||| ||||||    
T  8651431 catataagctataaactgttttcataagctattctgg-gagcttatggaaatatgctgaa 8651373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 15074812 - 15074769
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||    
T  15074812 tgttttcataagttatactggaaagcttatggaaataagctgaa 15074769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 36774774 - 36774727
Alignment:
Q  32 aaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||| ||||| ||| |||||||||||||| ||||||||||||    
T  36774774 aaactgtttttataagctatcctggagagcttatggaaataagctgaa 36774727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 3504760 - 3504794
Alignment:
Q  45 aagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||||||||| ||||||||||||    
T  3504760 aagttattctggagagcttatgtaaataagctgaa 3504794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 3977309 - 3977359
Alignment:
Q  30 ataaactgttttcataagttattctggagagcttatgaaaataagctgaag 80  Q
    |||| ||||||||||||||| || ||||||  |||||||||||||||||||    
T  3977309 ataagctgttttcataagttgttgtggagaaattatgaaaataagctgaag 3977359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 6582906 - 6582864
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatga 67  Q
    ||||||||||||||||||||||||| | ||| |||||||||||    
T  6582906 aagttataaactgttttcataagttttcctgcagagcttatga 6582864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 41957525 - 41957471
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||| ||||||||||||| ||| || |||| |||||||||||||| ||||    
T  41957525 aagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaa 41957471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 4014493 - 4014444
Alignment:
Q  30 ataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| ||||||||||||| |||  |||||| |||||||||||||||||||    
T  4014493 ataagctgttttcataagctatcttggagaacttatgaaaataagctgaa 4014444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 10125779 - 10125738
Alignment:
Q  38 ttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||   ||||||||||||||||||||||||||    
T  10125779 ttttcataagttaccatggagagcttatgaaaataagctgaa 10125738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 17258952 - 17258903
Alignment:
Q  30 ataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| ||||||||||||  ||| ||| |||||||||||||||||||||||    
T  17258952 ataagctgttttcataaactatcctgaagagcttatgaaaataagctgaa 17258903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 37690717 - 37690656
Alignment:
Q  19 tcatacaagttataaactgttttcataa-gttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| |||||  ||||||||||| |||||| ||||||||||||| ||||||||||||    
T  37690717 tcatataagctataagttgttttcataaagttattatggagagcttatggaaataagctgaa 37690656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 7319396 - 7319456
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| |||||||||||||| |||| |||  |||||| ||||| |||||||||||||    
T  7319396 tcatataagctataaactgttttcgtaagctatcttggagaacttataaaaataagctgaa 7319456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 13604913 - 13604869
Alignment:
Q  35 ctgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||||  || |||||||||||||||||| ||||    
T  13604913 ctgttttcataagttatcttgaagagcttatgaaaataagttgaa 13604869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 16328856 - 16328915
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| || ||||||||||||||| |||| ||  |||||||||||||| ||||||||||||    
T  16328856 tcatataaattataaactgttttcgtaagctac-ctggagagcttatggaaataagctgaa 16328915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 16863770 - 16863830
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||| |||||||||| ||||||  |||  | ||| |||||||||||||||    
T  16863770 tcatacaagttataagctgttttcatcagttatcatggttaacttgtgaaaataagctgaa 16863830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14548801 - 14548741
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  14548801 tcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaa 14548741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 34254878 - 34254828
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||| |||||||||| ||||||||||| |||||| ||||||||||||    
T  34254878 tataaactattttcataagctattctggagaacttatgtaaataagctgaa 34254828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 40665425 - 40665479
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||  ||||||||||||||||  |||||||||||| |||||||||||||    
T  40665425 aagttataagatgttttcataagttatcttggagagcttataaaaataagctgaa 40665479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 48286889 - 48286831
Alignment:
Q  20 catacaagttataaactgttttcataagttattctggagagcttatgaaaataagctga 78  Q
    |||| |||||||||||||||||||||||||||  || |||||||||  |||||||||||    
T  48286889 catataagttataaactgttttcataagttatcatgtagagcttatagaaataagctga 48286831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 2719468 - 2719517
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctga 78  Q
    ||||||||||||||||||| |||  |||||| ||||||||||||||||||    
T  2719468 tataaactgttttcataagctatcttggagaacttatgaaaataagctga 2719517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 41633361 - 41633410
Alignment:
Q  30 ataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| |||||||||| || |||| ||||||||||||||||||||||||||    
T  41633361 ataagctgttttcatcagctattttggagagcttatgaaaataagctgaa 41633410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 3845626 - 3845582
Alignment:
Q  35 ctgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||||  |||||| |||||||||||||||||||    
T  3845626 ctgttttcataagttatcttggagaacttatgaaaataagctgaa 3845582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 8933794 - 8933834
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagct 76  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  8933794 tgttttcataagttatcttggagagcttatgaaaataagct 8933834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 1816590 - 1816633
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||    
T  1816590 tgttttcataagctatactggagagcttatcaaaataagctgaa 1816633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 44284147 - 44284100
Alignment:
Q  32 aaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||| ||| |||||||||||||  ||||||||||||    
T  44284147 aaactgttttcataagctatcctggagagcttatagaaataagctgaa 44284100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 20502138 - 20502088
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||    
T  20502138 tataagctgttttcataagctatcctgaagagcttatgagaataagctgaa 20502088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 24158577 - 24158528
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataag 74  Q
    |||| |||| ||||||||||||| ||| |||||||||||||| |||||||    
T  24158577 aagtaataagctgttttcataagctatcctggagagcttatggaaataag 24158528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 48807693 - 48807758
Alignment:
Q  14 tattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| ||||| ||| |||||  ||||||||||||||||||| ||||||   |||||||||||||||    
T  48807693 tattttcatagaagctataagttgttttcataagttattctagagagccagtgaaaataagctgaa 48807758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 21661508 - 21661560
Alignment:
Q  23 acaagttataaactgttttcataagttattctggagagcttatgaaaataagc 75  Q
    ||||||| |||| |||||||||||  |||||| |||||||||| |||||||||    
T  21661508 acaagttctaaattgttttcataatctattctagagagcttataaaaataagc 21661560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 24280701 - 24280761
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| |||| ||||| ||||| ||||||| |||  ||||||||||||||||||||| ||||    
T  24280701 tcattcaagctataagctgttgtcataagctatcatggagagcttatgaaaataagttgaa 24280761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 24887347 - 24887303
Alignment:
Q  35 ctgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||| ||| ||||||||||||||  |||||||||||    
T  24887347 ctgttttcataagctatcctggagagcttatgggaataagctgaa 24887303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 48528562 - 48528606
Alignment:
Q  35 ctgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||| |||||||||||| ||||  ||||||||||||    
T  48528562 ctgttttcataagctattctggagagtttatagaaataagctgaa 48528606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 51510256 - 51510216
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagct 76  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  51510256 tgttttcataagttatcgtggagagcttatggaaataagct 51510216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 44821955 - 44822009
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||    
T  44821955 aagttataagctgttttcataagctattctggagaacttatgaaaataagttgaa 44822009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 7244683 - 7244730
Alignment:
Q  32 aaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||    
T  7244683 aaactgttttcataagctatattggagagcttatgaaaataagctgaa 7244730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 21453281 - 21453344
Alignment:
Q  16 ttctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||| ||| ||||||||||||||||||| ||| || ||||||| ||||| ||||||||||    
T  21453281 ttctcatataagctataaactgttttcataagctatcctagagagctaatgaagataagctgaa 21453344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 6601367 - 6601416
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctga 78  Q
    ||||| ||||||| ||||| |||||||||| |||||||||||||||||||    
T  6601367 tataagctgtttttataagctattctggagtgcttatgaaaataagctga 6601416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 24363686 - 24363621
Alignment:
Q  14 tattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| ||||||| |||||||  |||||||||||| ||| |||||||| ||||| ||||||||||||    
T  24363686 tattttcatacaggttataagttgttttcataagctatcctggagaggttatggaaataagctgaa 24363621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 30723117 - 30723065
Alignment:
Q  21 atacaagttataaactgttttcataagttattctggagagcttatgaaaataa 73  Q
    ||||||||||||| || |||||||||| ||| ||||||||||| |||||||||    
T  30723117 atacaagttataagctattttcataagctatcctggagagcttttgaaaataa 30723065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 33709438 - 33709498
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| |||||||||||||||||||||||||| ||||  | ||||||||||| ||||    
T  33709438 tcatataagctataaactgttttcataagttattctcgagacttgatgaaaataagttgaa 33709498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 29363515 - 29363562
Alignment:
Q  26 agttataaactgttttcataagttattctggagagcttatgaaaataa 73  Q
    |||||||| ||||| ||||||||||| |||||||||||||| ||||||    
T  29363515 agttataagctgttatcataagttatcctggagagcttatggaaataa 29363562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 39505963 - 39506006
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||| |||||||||||| ||||| ||||||||||||    
T  39505963 tgttttcataagctattctggagagtttatggaaataagctgaa 39506006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 40252179 - 40252128
Alignment:
Q  27 gttataaactgttttcataagttattctggagagcttatgaaaataagctga 78  Q
    ||||||| || ||||||||||||||  |||||| ||||||||||||||||||    
T  40252179 gttataagctcttttcataagttatcttggagaacttatgaaaataagctga 40252128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 46082024 - 46082086
Alignment:
Q  19 tcatacaagttataaactgttttcataa--gttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| |||||||||  ||||||||||   | |||||||||||||||||||||||||||||||    
T  46082024 tcatataagttataagttgttttcatagacgctattctggagagcttatgaaaataagctgaa 46082086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 514767 - 514817
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||| ||| ||||||||||| | |||||||||||||    
T  514767 tataagctgttttcataagctatcctggagagcttgtcaaaataagctgaa 514817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 25596033 - 25596083
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||| |||||||||| |||  ||||||||||||||||||||| ||||    
T  25596033 tataaactcttttcataagctatcttggagagcttatgaaaataagttgaa 25596083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 27517348 - 27517314
Alignment:
Q  32 aaactgttttcataagttattctggagagcttatg 66  Q
    |||||||||||||||||||| ||||||||||||||    
T  27517348 aaactgttttcataagttatcctggagagcttatg 27517314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 39542363 - 39542325
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataag 74  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  39542363 tgtttccataagttatcctggagagcttatgaaaataag 39542325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 47559671 - 47559629
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaat 71  Q
    ||||| |||||||||||||||||| |||||| |||||||||||    
T  47559671 tataagctgttttcataagttattttggagaacttatgaaaat 47559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 25507334 - 25507399
Alignment:
Q  14 tattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||| ||||| ||| |||||  ||||||||||||||||||| || ||||||| ||| |||||||||    
T  25507334 tattttcatataagctataagttgttttcataagttattctagaaagcttattaaagtaagctgaa 25507399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 28691909 - 28691856
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataagctga 78  Q
    |||||||| | |||||||||||| ||| ||||||| ||||||||||||| ||||    
T  28691909 aagttatacattgttttcataagctatcctggagatcttatgaaaataaactga 28691856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 46104630 - 46104589
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctg 77  Q
    |||||||||||| ||| ||| |||||||||||||||||||||    
T  46104630 tgttttcataagctatgctgaagagcttatgaaaataagctg 46104589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 48917409 - 48917368
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctg 77  Q
    |||||||||||| |||  ||||||||||||||||||||||||    
T  48917409 tgttttcataagctatcttggagagcttatgaaaataagctg 48917368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 19530229 - 19530185
Alignment:
Q  30 ataaactgttttcataagttattctggagagcttatgaaaataag 74  Q
    ||||||||||||||||||||||| ||||  ||||||| |||||||    
T  19530229 ataaactgttttcataagttattttggatggcttatggaaataag 19530185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 27378892 - 27378848
Alignment:
Q  35 ctgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||  ||| ||||||||||||||||||||| |||||    
T  27378892 ctgttttcataaactatcctggagagcttatgaaaataaactgaa 27378848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 33646030 - 33645987
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataa 73  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||    
T  33646030 tataaactgttttcataagcta-tctggagagcttatggaaataa 33645987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 40689073 - 40689009
Alignment:
Q  12 attattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    |||||| ||||| ||| ||||| |||| |||||||| ||| ||||| | ||||||||||||||||    
T  40689073 attattttcatataagctataagctgtgttcataagctatcctggataacttatgaaaataagct 40689009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 47941323 - 47941367
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataa 73  Q
    ||||||||||||||||||| ||| | |||||| ||||||||||||    
T  47941323 tataaactgttttcataagctatcccggagagtttatgaaaataa 47941367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 31862478 - 31862543
Alignment:
Q  14 tattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||| || ||| |||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  31862478 tattctcgtataagctataagatgttttcataagttatcctagagagcttatgaaaataagctgaa 31862543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 35220791 - 35220746
Alignment:
Q  31 taaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  35220791 taaactgttttcataagctattctggagagcttataaaaataagct 35220746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 11795082 - 11795142
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||| ||| ||||||||| |||| ||||||||||||| ||||||||||||    
T  11795082 tcatataagttataagctgatttcataagctattatggagagcttatggaaataagctgaa 11795142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 20672753 - 20672800
Alignment:
Q  32 aaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  20672753 aaactgtttttataagctatcctggagagcttatgaaaataagctgaa 20672800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 27028831 - 27028881
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||| |||  ||||||||||||||||||||||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataagctgaa 27028881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 27754412 - 27754454
Alignment:
Q  37 gttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  27754412 gttttcataagctattttggagagcttatgaaaataagctgaa 27754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 34551116 - 34551166
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataagc 75  Q
    |||||||||  ||||||| |||||||| |||||||||||||||||||||||    
T  34551116 aagttataagttgttttcttaagttatcctggagagcttatgaaaataagc 34551166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 12361182 - 12361242
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| ||||| ||||||||||||||||||| |||||||| ||| ||||||| ||||    
T  12361182 tcatataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaa 12361242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 44236887 - 44236843
Alignment:
Q  35 ctgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||    
T  44236887 ctgttttcataagctatattggagagcttatgaaaataagctgaa 44236843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 9700000 - 9700051
Alignment:
Q  28 ttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||| ||||||||||| |||||||  ||||||||||||||||||| ||||    
T  9700000 ttataagctgttttcatatgttattcaagagagcttatgaaaataaggtgaa 9700051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 10075625 - 10075574
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    ||||||||| || |||||||||| ||| || |||||||||||||||||||||    
T  10075625 aagttataagctattttcataagctatcctagagagcttatgaaaataagct 10075574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 13652205 - 13652260
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataag 74  Q
    ||||| |||||||||| |||||| ||||| |||||||||||||||| | |||||||    
T  13652205 tcatataagttataaattgtttttataagctattctggagagcttaaggaaataag 13652260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 13710848 - 13710903
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataag 74  Q
    ||||| |||||||||| |||||| ||||| |||||||||||||||| | |||||||    
T  13710848 tcatataagttataaattgtttttataagctattctggagagcttaaggaaataag 13710903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 39268591 - 39268524
Alignment:
Q  12 attattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||| ||||| |||||| || ||||||||||||| | |||| ||||||||||| |||||| |||||    
T  39268591 attattttcatataagttaaaagctgttttcataagcttttctagagagcttatggaaataaactgaa 39268524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 1433556 - 1433598
Alignment:
Q  37 gttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||    
T  1433556 gttttcataagctatcctggagagcttatgaaaataagttgaa 1433598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 10923603 - 10923641
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataag 74  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  10923603 tgttttcattagctattctggagagcttatgaaaataag 10923641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 11494146 - 11494196
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||| |||||||||| |||  || |||||||||||||||||||||||    
T  11494146 tataaactattttcataagctatcttgaagagcttatgaaaataagctgaa 11494196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 28769409 - 28769359
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||||||| |||| ||||||| ||||| ||||||||||||    
T  28769409 tataagctgttttcataagctattttggagagtttatggaaataagctgaa 28769359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 40157519 - 40157585
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaagttgaagacaacttatacacatatcataa 108  Q
    |||||||||| ||||||| ||||||||| |||||||||||      | |||||||||||| ||||||||||||    
T  40157519 tgttttcatatgttattccggagagcttgtgaaaataagc------taaagacaacttattcacatatcataa 40157585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 25097387 - 25097427
Alignment:
Q  30 ataaactgttttcataagttattctggagagcttatgaaaa 70  Q
    |||| ||||||||||||| ||| ||||||||||||||||||    
T  25097387 ataagctgttttcataagctatcctggagagcttatgaaaa 25097427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 32387116 - 32387075
Alignment:
Q  38 ttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  32387116 ttttcataagttattctgaagagcttatgaaaataagctgaa 32387075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 1275139 - 1275199
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  1275139 tcatataagctataagctgttttcatatgttatcctggagagcttatggaaataagctgaa 1275199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 33787825 - 33787765
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||| |||||||||||||||||  ||||||||||||| ||||| ||||||    
T  33787825 tcatataagttataagctgttttcataagttatcttggagagcttatggaaataggctgaa 33787765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 32386626 - 32386583
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||| |||||| |||||||||||||||||||||||||||    
T  32386626 tgttttcattagttatcctggagagcttatgaaaataagctgaa 32386583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 3168343 - 3168281
Alignment:
Q  17 tctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||| ||| |||||||||||||| |||| ||| |||||||||||| | ||||||||||||    
T  3168343 tctcatataagctataaactgttttcttaagctatcctggagagcttaaggaaataagctgaa 3168281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 28641819 - 28641772
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    |||||||||||||||  || ||||||| ||||||||||||||||||||    
T  28641819 tataaactgttttcaatagctattctgcagagcttatgaaaataagct 28641772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 8365050 - 8364996
Alignment:
Q  25 aagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||||||||||||||||||| |||  ||| || || ||||||||||||||||    
T  8365050 aagttataaactgttttcataagctatcatggtgaactgatgaaaataagctgaa 8364996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 28088311 - 28088245
Alignment:
Q  10 agattattctcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagct 76  Q
    ||||| || ||||| ||| ||||||||||||||||||| |||  ||||||||| ||| |||||||||    
T  28088311 agattgttttcatataagctataaactgttttcataagctatcatggagagctcatggaaataagct 28088245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 32386176 - 32386126
Alignment:
Q  29 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| |||||||||| |||||| ||||| ||||||||||| |||||||||    
T  32386176 tataagctgttttcattagttatcctggaaagcttatgaaagtaagctgaa 32386126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 4247141 - 4247081
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||||||||| ||||||||||||||| | || ||  ||||||||||| ||||||||    
T  4247141 tcatataagttataagctgttttcataagttgtcctagaaggcttatgaaaacaagctgaa 4247081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 6647385 - 6647437
Alignment:
Q  27 gttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||||| ||||||||||||| |||  | ||||||||||||||||||| ||||    
T  6647385 gttataatctgttttcataagctatcttagagagcttatgaaaataagttgaa 6647437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 31812076 - 31812036
Alignment:
Q  36 tgttttcataagttattctggagagcttatgaaaataagct 76  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  31812076 tgttttcataagctatcttggagagcttatgaaaataagct 31812036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 32171447 - 32171403
Alignment:
Q  35 ctgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    |||||||||| |||||| ||||| |||||||| ||||||||||||    
T  32171447 ctgttttcattagttatcctggatagcttatggaaataagctgaa 32171403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 32171457 - 32171517
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| ||| ||||| |||||||  |||| ||| |||||||||||||| ||||||||||||    
T  32171457 tcatataagctataatctgttttagtaaggtatcctggagagcttatggaaataagctgaa 32171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 32848676 - 32848616
Alignment:
Q  19 tcatacaagttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 79  Q
    ||||| |||||||||| | |||||||| |||||  |||||||||||||| |||||| ||||    
T  32848676 tcatataagttataaatttttttcatatgttatcttggagagcttatgataataagttgaa 32848616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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