View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_18 (Length: 398)
Name: NF15673_low_18
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 381
Target Start/End: Original strand, 33412922 - 33413294
Alignment:
| Q |
13 |
aaaatagaatggttaacacaattaaaatatgtgatatggttaattacgttcagtgatggttaatgaatctaaaaagttgccgcaactcgtttatcatcca |
112 |
Q |
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| T |
33412922 |
aaaattgaatggttaacacaattaaaatatgtggtatggttaattacgttcagtgatggttaatgaatctaaaaagttgccgcaactcgtttatcatcca |
33413021 |
T |
|
| Q |
113 |
ttgcatgcaattaactacgattttgagcactattaaccataattgtagtttagctttcctttttatacttttggtttagtcacaagacaaacctaaggta |
212 |
Q |
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| T |
33413022 |
ttgcatgcaattaactacgattttgagcactattaaccataattgtagtttagctttcctttttttacttttggtttagtcacaagacaaacctaaggta |
33413121 |
T |
|
| Q |
213 |
ttcttccaacacttgatgaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttgggaagacatgcttttattatgct |
312 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33413122 |
tttttccaacacttgatgaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttggcaagacatgcttttattatgct |
33413221 |
T |
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| Q |
313 |
agaggagat----gcatctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttg |
381 |
Q |
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| T |
33413222 |
agaggagatatcaccatctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttg |
33413294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 381
Target Start/End: Original strand, 33491345 - 33491719
Alignment:
| Q |
13 |
aaaatagaatggttaacacaattaaaatatgtgatatggttaat--tacgttcagtga-tggttaatgaatctaaaaagttgccgcaactc-gtttatca |
108 |
Q |
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| T |
33491345 |
aaaattgaatggttaacacaattaaaacatgtggtgttgttaatattacattaagtgaatggtta-tgaatataaaaagttgtcgcaactctgtttatca |
33491443 |
T |
|
| Q |
109 |
tccattgcatgcaattaactacgattttgagcactattaaccataattgtagtttagctttcctttttat--acttttggtttagtcacaagacaaacct |
206 |
Q |
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||||||||| | |||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||| | ||||||||||||| |
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| T |
33491444 |
tccattgcacgtaattaactacaattttg-gcactattaaccataattgtagtttagctttattttttttttacttttggtttacttacaagacaaacct |
33491542 |
T |
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| Q |
207 |
aaggtattcttccaacacttgatgaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcag-tttttgggaagacatgctttta |
305 |
Q |
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| T |
33491543 |
aaggttttcttccaacacttgatgaggatcttctt-tatcttttacaagaaggatccaattcttgaatttccttcagttttttgggaagacatggtttta |
33491641 |
T |
|
| Q |
306 |
ttatgctagaggagat----gcatctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttg |
381 |
Q |
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||| || |||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||| |
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| T |
33491642 |
tta--ctggaggagatatcaccatctccatctgaagaaaacattgttgatgaaagatatcatttcatgccacttcttttg |
33491719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 33420059 - 33420434
Alignment:
| Q |
19 |
gaatggttaacacaattaaaatatgtgatatggttaattacgttcagtg-atggttaatgaatctaaaaagttgccgcaactcgtttatcatccattgca |
117 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||| | || ||||||||||||| || |||| || |||||||| ||||||||| |||||| |
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| T |
33420059 |
gaatggttaacacaattaaattatgtgttatggttaattacgtttaatggatggttaatgaatatataaaggtgtcgcaactcatttatcatcaattgca |
33420158 |
T |
|
| Q |
118 |
tgcaattaactacgattttgagcactattaaccataattgtagtttagctt-tcctttttatacttttggtttagtcacaagacaaacctaaggtattct |
216 |
Q |
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| |||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| | ||| |||||||||||||||||||| |
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| T |
33420159 |
cgtaattaactacaattttgagcactattaaccataattgtaatttagcttaatttttttttacttttggttcactcatgagacaaacctaaggtattct |
33420258 |
T |
|
| Q |
217 |
tccaacacttgatgaggatctccttctgtcttttacaagaaggatccaattcttgaatttccttcagtttttgggaaga----catgcttttattatgct |
312 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| |||| |
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| T |
33420259 |
tccaacacttgatgaggatctccttatgtcttttacttgaaggatcaaattcttgaatttccttcggtttttggggagacatgcatgcttttattttgct |
33420358 |
T |
|
| Q |
313 |
---agaggagat----gcatctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttg |
381 |
Q |
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||||||||| ||||||||| | |||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
33420359 |
acaagaggagatatcaccatctccatctaaagaaaacattgttgatgaaatatatcatttcatgtcacttcttttg |
33420434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 381
Target Start/End: Complemental strand, 28812368 - 28812252
Alignment:
| Q |
272 |
aatttccttcagtttttgggaagacatgcttttattatgcta---gaggagatg----catctccatatgaagaaaacattgttgatgaacgatatcctt |
364 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| | |||||||| ||||||||| ||||||||||||||| |||||| |||||| || |
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| T |
28812368 |
aatttccttcagtttttgggaagacacgcttttatcatgcaaccagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatt |
28812269 |
T |
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| Q |
365 |
tcatgtcacttcttttg |
381 |
Q |
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||||||||||||||||| |
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| T |
28812268 |
tcatgtcacttcttttg |
28812252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 28812533 - 28812407
Alignment:
| Q |
150 |
cataattgtagtttagctttccttttta-tacttttggtttagtcacaagacaaacctaaggtattcttccaacacttgatgaggatctccttctgtc-t |
247 |
Q |
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|||||||| ||||||||||| ||||| ||||||||||||| ||| | | ||| |||||||||||||||||| ||||||||||| |||||||||| | |
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| T |
28812533 |
cataattggagtttagctttaattttttgtacttttggtttactcatacgcaaaatctaaggtattcttccaacttttgatgaggatatccttctgtctt |
28812434 |
T |
|
| Q |
248 |
tttacaagaaggatccaattcttgaat |
274 |
Q |
| |
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||| | |||||||||||||||||||| |
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| T |
28812433 |
ttttcttgaaggatccaattcttgaat |
28812407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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