View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15673_low_19 (Length: 368)
Name: NF15673_low_19
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 53006693 - 53006342
Alignment:
| Q |
1 |
gaaattctcaccatgtaacctttatccctttgccgatgccaatcaaatccttaacttcttccccaatttcattcttgaatagatagtgtaatggataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53006693 |
gaaattctcaccatgtaacctttatccctttgccgatgccaatcaaatccttaacttcttccccaatttcattcttgaatagatagtgtaatggataatt |
53006594 |
T |
|
| Q |
101 |
gaattccgcactataaattaaatatattatcttgagcaattctagacccctacaactttacttcaatatcttttctctttctttattccttgaatcagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53006593 |
gaattccgcactataaattaaatatattatcttgagcaattctagacccctacaactttacttcaatatcttttctctttctttattccttgaatcagct |
53006494 |
T |
|
| Q |
201 |
ccacccatctttaattattatgttagagaaataacgcactgccacaactttccaaagatcattttaagtggaagatacttgcctaaagaaaaataaataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53006493 |
ccacccatctttaattattatgttagagaaataacgcactgccacaactttccaaagatcattttaagtggaagatacttgcctaaagaaaaataaataa |
53006394 |
T |
|
| Q |
301 |
tgagattaaatacaatagatgactctatgtttgtaaggtgagaacatgaacc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53006393 |
tgagattaaatacaatagatgactctatgtttgtaaggtgagaacatgaacc |
53006342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University