View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_2 (Length: 671)
Name: NF15673_low_2
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 16625978 - 16626488
Alignment:
| Q |
1 |
ttttttcaccattataatatcaagaccggttttttcgaaaatccctacttagggtaattgaaagggaagttgggctgagttttgttatttcacagtagta |
100 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16625978 |
ttttttcaacattataatatgaagaccggttttttcgaaaatccctacttagggtaattgaaagggaagtttggctgagttttgttatttcacagtagta |
16626077 |
T |
|
| Q |
101 |
caatgtgtctcaggcgtaaaggcaaaacttcagcgacgtttgatgcaaggatataatggaatgaaacaacctgttctgtactattcctacttttatgttg |
200 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16626078 |
caatgtgtctcaagtgtaaaggcaaaacttcagcgacgtttgatgcaaggatataatggaatgaaacaacct-------actattcctacttttatgttg |
16626170 |
T |
|
| Q |
201 |
tttggttccataattttttctggaacttaaatgttctgcattttttacttcatgccatgttctatttagttttttaatatccatcaaacatagtaaagaa |
300 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16626171 |
tttggttccataattttttttggaagttaaatgttctgcattttttacttcatgccatgttctatttagttttttaatatccatcaaacatagtaaagaa |
16626270 |
T |
|
| Q |
301 |
tccataagttttattgtgttgttttaatgtgtgctaaacgctacttttaaagaatccagatttcatgctagaatgatgtaagttctctttagaataacat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16626271 |
tccataagttttattgtgttgttttaatgtgtgctaaacactacttttaaagaatccagatttcatgctagaatgatgtaagttctctttagaataacat |
16626370 |
T |
|
| Q |
401 |
gttctttaccacttggtttcgaaggggttaggagagaaagcgaaggaaggactttgaggataagggggaagaaaggaaatgagaagggttgatagccctc |
500 |
Q |
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|||||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16626371 |
gttctttaccactttgtttcggaggggttaagagagaaagcgagggaaggactttgaggataagggggaagaaaggaaatgagaagggttgatagccctc |
16626470 |
T |
|
| Q |
501 |
catcttgcatagggtttt |
518 |
Q |
| |
|
|||||||||||||||||| |
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| T |
16626471 |
catcttgcatagggtttt |
16626488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 527 - 661
Target Start/End: Original strand, 16626640 - 16626774
Alignment:
| Q |
527 |
agggattcccttcatttccctctctcacattccctccatagcactcctctcacttctcctcttgactcccaaataaaggtcaagtgaatagccatagtga |
626 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16626640 |
agggattcccttcatttccctctctcacagtccctccatagcactcctctcacttctcctcttgactcccaaataaaggtcaagtgaatagccatagtga |
16626739 |
T |
|
| Q |
627 |
agtgactatgcaaagagaggatacttgagaataat |
661 |
Q |
| |
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| T |
16626740 |
agtgactatgcaaagagaggatacttgagaataat |
16626774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 86 - 319
Target Start/End: Complemental strand, 56239810 - 56239583
Alignment:
| Q |
86 |
tatttcacagtagtacaatgtgtctcaggcgtaaaggcaaaacttcagcgacgtttgatgcaaggatataatggaatgaaacaacctgttctgtactatt |
185 |
Q |
| |
|
||||| ||| |||||||||| ||||| | | |||||||||||||||| | ||||||||||| |||| |||||| ||||||||||||||| |||| | | |
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| T |
56239810 |
tattttacaatagtacaatgcctctcaagtgaaaaggcaaaacttcagtaatgtttgatgcaatgatagaatggattgaaacaacctgttccgtacaact |
56239711 |
T |
|
| Q |
186 |
cctacttttatgttgtttggttccataattttttctggaacttaaatgttctgcattttttacttcatgccatgttctatttagttttttaatatccatc |
285 |
Q |
| |
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| | | || |||||||||||||| | |||| || ||| |||||| ||||||||||||| ||||| |||||| ||| |||||||| | |||| |
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| T |
56239710 |
ctgagtgtt---ttgtttggttccatcaattttggtgtaac--caatgtttcgcattttttactttatgccgtgttctgttt-tatttttaatttgcatc |
56239617 |
T |
|
| Q |
286 |
aaacatagtaaagaatccataagttttattgtgt |
319 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |
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|
| T |
56239616 |
aaacatagtaaagaatccatacgttttgttgtgt |
56239583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 23946251 - 23946122
Alignment:
| Q |
53 |
ggtaattgaaagggaagttgggctgagttt-tgttatttcacagtagtacaatgtgtctcaggcgtaaaggcaaaacttcagcgacgtttgatgcaagga |
151 |
Q |
| |
|
|||||||||||| |||||| ||||||| || | ||||| || |||||||||| ||||| | | |||||| ||||||||| | ||||||||||| || |
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| T |
23946251 |
ggtaattgaaagagaagtttggctgaggttctcctatttttcaatagtacaatgcctctcaagtgaaaaggcgaaacttcagtaatgtttgatgcaatga |
23946152 |
T |
|
| Q |
152 |
tataatggaatgaaacaacctgttctgtac |
181 |
Q |
| |
|
|| |||||| || |||||||||||| |||| |
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|
| T |
23946151 |
taaaatggattgtaacaacctgttccgtac |
23946122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 23946068 - 23945990
Alignment:
| Q |
240 |
attttttacttcatgccatgttctatttagttttttaatatccatcaaacatagtaaagaatccataagttttattgtgt |
319 |
Q |
| |
|
||||||||||| ||||| |||||| ||| ||||| ||| | ||||||||||||||||||||||||| |||| |||||| |
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| T |
23946068 |
attttttactttatgccgtgttctgttttattttt-aatttgcatcaaacatagtaaagaatccatacattttgttgtgt |
23945990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 16106873 - 16106951
Alignment:
| Q |
240 |
attttttacttcatgccatgttctatttagttttttaatatccatcaaacatagtaaagaatccataagttttattgtgt |
319 |
Q |
| |
|
||||||||||| ||||| |||||| ||| ||||| ||| | ||||||||||||||||||||||||| ||||| |||||| |
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| T |
16106873 |
attttttactttatgccgtgttctgttttattttt-aatttgcatcaaacatagtaaagaatccatacgttttgttgtgt |
16106951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 16106690 - 16106819
Alignment:
| Q |
53 |
ggtaattgaaagggaagttgggctgagttt-tgttatttcacagtagtacaatgtgtctcaggcgtaaaggcaaaacttcagcgacgtttgatgcaagga |
151 |
Q |
| |
|
|||||||||||| |||||| ||||||| || | ||||| || |||||||||| ||||| | | ||||| |||||||||| | ||||||||||| || |
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|
| T |
16106690 |
ggtaattgaaagagaagtttggctgaggttctcctatttttcaatagtacaatgcctctcaagtgaaaaggaaaaacttcagtaatgtttgatgcaatga |
16106789 |
T |
|
| Q |
152 |
tataatggaatgaaacaacctgttctgtac |
181 |
Q |
| |
|
|| |||||| || |||||||||||| |||| |
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|
| T |
16106790 |
taaaatggattgtaacaacctgttccgtac |
16106819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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