View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_20 (Length: 367)
Name: NF15673_low_20
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 26449164 - 26449504
Alignment:
| Q |
11 |
aaattattctgaccgttaaataaatcgaagttgatctccacacaattcatctgttccaaatacacattttctttcaatacacacttcacgccaatattct |
110 |
Q |
| |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26449164 |
aaattattctgaccgttagataaatctaagttgatctccacacaattcatctgttcccaataaacattttctttcaatacacacttcacgccaatattct |
26449263 |
T |
|
| Q |
111 |
cctccactttccaatattcacccaccactaccgaagtctctttccattgcctccctccgtcgtctcatcttccactaccgaaggcacatctcctccctcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449264 |
cctccactttccaatattcacccaccactacctaagtctctttccaatgcctccctccgtcgtctcatcttccactaccgaaggcacatctcctccctcc |
26449363 |
T |
|
| Q |
211 |
tcttggcccaccaccgaagacaactccctgtcttcagcctaatttcttctttccttccttcctgtttaccacaattttctcactcctgtaagccctctct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449364 |
tcttggcccaccaccgaagacaactccctgtcttcagcctaatttcttctttccttccttcctgtttaccacaattttctcactcctgtaagccctctct |
26449463 |
T |
|
| Q |
311 |
ctgtaccgctttctctctcccccataactctatcctccatt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449464 |
ctgtaccgctttctctctcccccataactctatcctccatt |
26449504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 91 - 351
Target Start/End: Original strand, 4077995 - 4078249
Alignment:
| Q |
91 |
acacttcacgccaatattctcctccactttccaatattcacccaccactaccgaagtctctttccattgcctccctccgtcgtctcatcttccactaccg |
190 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4077995 |
acacttcacaccaatattctcctctactttccaatattcacctaccactaccgaactctctctccattgcctccctccgtcgtctcatcttccactaccg |
4078094 |
T |
|
| Q |
191 |
aaggcacatctcctccctcctcttggcccaccaccgaagacaactccctgtcttcagcctaatttcttctttccttccttcctgtttaccacaattttct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
4078095 |
aaggcacatctcctccctcctcttggcccaccaccgaagacaactccctgtcttcagcctaatttcttat----ttccttcctgtttaccacaattttct |
4078190 |
T |
|
| Q |
291 |
cactcctgtaagccctctctctgtaccgctttctctctcccccataactctatcctccatt |
351 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078191 |
cactcacgtaag--ctctctctgtaccgctttctctctcccccataactctatcctccatt |
4078249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 91 - 351
Target Start/End: Complemental strand, 16352034 - 16351780
Alignment:
| Q |
91 |
acacttcacgccaatattctcctccactttccaatattcacccaccactaccgaagtctctttccattgcctccctccgtcgtctcatcttccactaccg |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
16352034 |
acacttcacaccaatattctcctccactttccaatattcacccaccactaccgaactctctctccatcgcctccctccgtcgtctcatcttccactgccg |
16351935 |
T |
|
| Q |
191 |
aaggcacatctcctccctcctcttggcccaccaccgaagacaactccctgtcttcagcctaatttcttctttccttccttcctgtttaccacaattttct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
16351934 |
aaggcacatctcctccctcctcttggcccaccaccgaagacaactccctgtcttcagcctaatttcttat----ttccttcctgtttaccacaattttct |
16351839 |
T |
|
| Q |
291 |
cactcctgtaagccctctctctgtaccgctttctctctcccccataactctatcctccatt |
351 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16351838 |
cactcacgtaag--ctctctctgtaccgctttctctctcccccataactctatcctccatt |
16351780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 40946781 - 40946858
Alignment:
| Q |
11 |
aaattattctgaccgttaaataaatcgaagttgatctccacacaattcatctgttccaaatacacattttctttcaat |
88 |
Q |
| |
|
|||| |||||| |||||| ||||||| | ||||||||| ||||||| ||||| || | |||| ||||||||||||||| |
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|
| T |
40946781 |
aaatcattctggccgttagataaatctatgttgatctctacacaatccatctatttccaataaacattttctttcaat |
40946858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 18941214 - 18941120
Alignment:
| Q |
91 |
acacttcacgccaatattctcctccactttccaatattcacccaccactaccgaagtctctttccattgcctccctccgtcgtctcatcttccac |
185 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||| |
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| T |
18941214 |
acacttcacaccaatattctcctccactttccaatattcacccaccactgccgaactctctctccattgcctccctccgttgtctcatcttccac |
18941120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 44712439 - 44712346
Alignment:
| Q |
91 |
acacttcacgccaatattctcctccactttccaatattcacccaccactaccgaagtctctttccattgcctccctccgtcgtctcatcttccac |
185 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||| ||||| | || ||||| ||||||||||||||||||||||||||||||||| |
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| T |
44712439 |
acacttcacaccaatattctcttccactttccaatattcacccagcacta-caaactctctctccattgcctccctccgtcgtctcatcttccac |
44712346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 23073432 - 23073361
Alignment:
| Q |
17 |
ttctgaccgttaaataaatcgaagttgatctccacacaattcatctgttccaaatacacattttctttcaat |
88 |
Q |
| |
|
||||| |||||||||||||| | || |||||||||||||| |||||||| |||| ||| ||||||||||| |
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|
| T |
23073432 |
ttctggccgttaaataaatctatgtagatctccacacaatccatctgttgtcaataaacaatttctttcaat |
23073361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 26955483 - 26955548
Alignment:
| Q |
11 |
aaattattctgaccgttaaataaatcgaagttgatctccacacaattcatctgttccaaatacaca |
76 |
Q |
| |
|
|||| ||||||||||||| ||||||| | ||||||||| ||||||| ||||| || | |||||||| |
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|
| T |
26955483 |
aaatcattctgaccgttagataaatctatgttgatctctacacaatccatctatttccaatacaca |
26955548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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