View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_21 (Length: 359)
Name: NF15673_low_21
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 50834553 - 50834911
Alignment:
| Q |
1 |
ttgcattaatgttgagctttgcttt-gatcatcaatcccgtctttccatgggcacattctcctgtacctttcacatggattcttggcatcaattctccaa |
99 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834553 |
ttgcattagtgttgagctttgcttttgatcatcaatcccgtctttccatgggcatattctcctgtacctttcacatggattcttggcatcaattctccaa |
50834652 |
T |
|
| Q |
100 |
gcccataaccatatatttagtgtgtctatgtaatttctattta--------ttagtcaatccca---ttctgtttcagagttataaatgtattctggata |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
50834653 |
gcccataaccatatatttagtgtgtctatgtaatttctatttacataattattagtcaatcccaatattctgtttcagagttataaatatattctggata |
50834752 |
T |
|
| Q |
189 |
atttaaaacaatcagtttgagtcgtgaattttgttcattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtc |
288 |
Q |
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|||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834753 |
atttgaaataatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtc |
50834852 |
T |
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| Q |
289 |
tcttggtttcttgaaattcaaaggttgttctatctttctttcttattttgttacattat |
347 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
50834853 |
tcttggtttcttgaaattccaaggttgttctatctttctttcttatgttgttacattat |
50834911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 50841300 - 50840942
Alignment:
| Q |
1 |
ttgcattaatgttgagctttgcttt-gatcatcaatcccgtctttccatgggcacattctcctgtacctttcacatggattcttggcatcaattctccaa |
99 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841300 |
ttgcattagtgttgagctttgcttttgatcatcaatcccgtctttccatgggcatattctcctgtacctttcacatggattcttggcatcaattctccaa |
50841201 |
T |
|
| Q |
100 |
gcccataaccatatatttagtgtgtctatgtaatttctattta--------ttagtcaatccca---ttctgtttcagagttataaatgtattctggata |
188 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
50841200 |
gcccataaccatatatttagtgtgtctatgtaatttctatttacataattattagtcaatcccaatattctgtttcagagttataaatatattctggata |
50841101 |
T |
|
| Q |
189 |
atttaaaacaatcagtttgagtcgtgaattttgttcattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtc |
288 |
Q |
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|||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841100 |
atttgaaataatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtc |
50841001 |
T |
|
| Q |
289 |
tcttggtttcttgaaattcaaaggttgttctatctttctttcttattttgttacattat |
347 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
50841000 |
tcttggtttcttgaaattccaaggttgttctatctttctttcttatgttgttacattat |
50840942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 198 - 347
Target Start/End: Original strand, 11729632 - 11729781
Alignment:
| Q |
198 |
aatcagtttgagtcgtgaattttgttcattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
297 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729632 |
aatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
11729731 |
T |
|
| Q |
298 |
cttgaaattcaaaggttgttctatctttctttcttattttgttacattat |
347 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11729732 |
cttgaaattccaaggttgttctatctttctttcttattttgttacattat |
11729781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 198 - 347
Target Start/End: Original strand, 23739944 - 23740093
Alignment:
| Q |
198 |
aatcagtttgagtcgtgaattttgttcattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
297 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23739944 |
aatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
23740043 |
T |
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| Q |
298 |
cttgaaattcaaaggttgttctatctttctttcttattttgttacattat |
347 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23740044 |
cttgaaattccaaggttgttctatctttctttcttattttgttacattat |
23740093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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