View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_23 (Length: 351)
Name: NF15673_low_23
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 39940235 - 39939904
Alignment:
| Q |
1 |
ttttattcttataactaaaatttctactaatttcaacttgagaacgacccctcttaggcttcaaagacttccttaagtggtggcctttatagtctctcct |
100 |
Q |
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| T |
39940235 |
ttttattcttataactaaaatttctactaatttcaacttgagcacgacccctcttaggcttcaaagacttccttaagtggtggcctttatagtctctcct |
39940136 |
T |
|
| Q |
101 |
tctacgcgaaaacgatctgcttaattctgcagatactggaaggtgatatgaaaggctttcgtcgatgtattcttcttcattcatttccattctaaacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39940135 |
tctacgcgaaaacgatctgcttaattctgcagatactggaaggtgatatgaaaggctttcgtcgatgtattcttcttcattcatttccattctaaacttt |
39940036 |
T |
|
| Q |
201 |
cttctcctcctcctcttgacattgtgtagtttaacacataagaaagtgcatgaatacacccaaatgtggaaacaagaagagaaacatgcccatatcaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39940035 |
cttctcctcctcctcttgacattgtgtagtttaacacataagaaagtgcatgaatacacccaaatgtggaaacaagaagagaaacatgcccatatcaatt |
39939936 |
T |
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| Q |
301 |
tgcaagcagagtgacatagacatctaattatg |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39939935 |
tgcaagcagagtgacatagacatctaattatg |
39939904 |
T |
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