View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_25 (Length: 335)
Name: NF15673_low_25
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 2 - 323
Target Start/End: Complemental strand, 25534862 - 25534541
Alignment:
| Q |
2 |
atgttctccatgtctatgactccagatgtgtggacacactcgtttttgattcacagatattttaaactgaataggatcgatgatgcttacatgacttata |
101 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534862 |
atgtactccatgtctatgactccggatgtgtggacacactcgtttttgattcacagatattttaaactgaataggatcgatgatgcttacatgacttata |
25534763 |
T |
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| Q |
102 |
acaaaatgatggagggtggtctcaaggtggttggttcgattacttgattaagaatggtccaactcaggtcgaactttgaaaaaagaagaggaagaatgat |
201 |
Q |
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| T |
25534762 |
acaacatgatggagggtggtctcaaggtggttggttcgattacttgattaagaatggtccaactcaggtcgaactttgaaaaaagaagaggaagaatgat |
25534663 |
T |
|
| Q |
202 |
gaatcaaaggattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactaagctacaccctaagcatat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25534662 |
gaatcaaaggattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactgagctacaccctaagcatat |
25534563 |
T |
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| Q |
302 |
tttgtctttgtacatcaatatt |
323 |
Q |
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|||||||||||||||||||||| |
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| T |
25534562 |
tttgtctttgtacatcaatatt |
25534541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 145 - 323
Target Start/End: Complemental strand, 25526710 - 25526537
Alignment:
| Q |
145 |
ttgattaagaatggtccaactcaggtcgaactttgaaaaaagaagaggaagaatgatgaatcaaagg-attctgaatccaatcccaaaaggaaagcacta |
243 |
Q |
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|||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25526710 |
ttgattaagaatggtccaactcggatcgaactttgaaataagaaga------atgatgaatcaaagggattctgaatccaatcccaaaaggaaagcacta |
25526617 |
T |
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| Q |
244 |
catcctaacatttaacagtaggacattttacataaactaagctacaccctaagcatattttgtctttgtacatcaatatt |
323 |
Q |
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| T |
25526616 |
catcctaacatttaacagtaggacattttacataaactaagctacaccctaagcatattttgtctttgtacatcaatatt |
25526537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 272
Target Start/End: Original strand, 25515651 - 25515864
Alignment:
| Q |
58 |
atattttaaactgaataggatcgatgatgcttacatgacttataacaaaatgatggagggtggtctcaaggtggttggttcgattacttgattaagaatg |
157 |
Q |
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|||| ||||| || |||||||| ||||||||| |||| |||||||||| |||||| |||||||||||||| | || ||| ||||||||||||||| |
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| T |
25515651 |
atatattaaagtggataggatccatgatgctttgatgataattaacaaaatggtggaggctggtctcaaggtggattgtatgatgacttgattaagaatg |
25515750 |
T |
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| Q |
158 |
gtccaactcaggtcgaactttgaaaaaagaagaggaagaatgatgaatcaaag-gattctgaatccaatcccaaaaggaaagcactacatcctaacattt |
256 |
Q |
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||| ||||| | || |||||||||||| | | ||| || ||||||||| || |||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
25515751 |
gtcaaactcggatcacactttgaaaaaa--ataagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacattt |
25515848 |
T |
|
| Q |
257 |
aacagtaggacatttt |
272 |
Q |
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||||||| |||||||| |
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| T |
25515849 |
aacagtatgacatttt |
25515864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 25541120 - 25541089
Alignment:
| Q |
241 |
ctacatcctaacatttaacagtaggacatttt |
272 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25541120 |
ctacatcctaacatttaacagtaggacatttt |
25541089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 7946725 - 7946623
Alignment:
| Q |
180 |
aaaaaagaagaggaagaatgatgaatcaaagg-attctgaatccaatcccaaaaggaaagcactacatcctaa-catttaacagtaggacattttacata |
277 |
Q |
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||||| ||| || ||||| ||||||||||||| || |||| |||||||| ||||| ||| ||||| ||||||| ||||||| |||||||||||||||| | |
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| T |
7946725 |
aaaaatgaaaagaaagaaagatgaatcaaagggatcctgattccaatccaaaaagaaaatcactaaatcctaaacatttaatagtaggacattttacaca |
7946626 |
T |
|
| Q |
278 |
aac |
280 |
Q |
| |
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||| |
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| T |
7946625 |
aac |
7946623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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