View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15673_low_27 (Length: 307)

Name: NF15673_low_27
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15673_low_27
NF15673_low_27
[»] chr3 (6 HSPs)
chr3 (16-189)||(50295498-50295671)
chr3 (255-307)||(50295370-50295422)
chr3 (21-96)||(42530739-42530813)
chr3 (15-106)||(46692051-46692141)
chr3 (83-132)||(42530734-42530783)
chr3 (116-160)||(2593544-2593588)
[»] chr7 (15 HSPs)
chr7 (25-141)||(11828572-11828688)
chr7 (15-126)||(21813823-21813934)
chr7 (21-131)||(46963810-46963919)
chr7 (20-96)||(15623189-15623264)
chr7 (20-96)||(15623096-15623171)
chr7 (65-160)||(11828581-11828676)
chr7 (84-170)||(21813810-21813896)
chr7 (15-96)||(44338474-44338554)
chr7 (21-92)||(44338386-44338456)
chr7 (21-127)||(44338260-44338364)
chr7 (255-306)||(46964000-46964051)
chr7 (83-160)||(46963840-46963917)
chr7 (255-305)||(44338139-44338189)
chr7 (83-137)||(44338280-44338334)
chr7 (83-133)||(44338376-44338426)
[»] chr5 (9 HSPs)
chr5 (15-130)||(9511777-9511892)
chr5 (62-187)||(9511751-9511876)
chr5 (15-130)||(11335377-11335490)
chr5 (65-180)||(11335396-11335509)
chr5 (255-307)||(24136662-24136714)
chr5 (16-96)||(24137049-24137127)
chr5 (21-96)||(24136894-24136969)
chr5 (20-68)||(24136984-24137032)
chr5 (101-156)||(24136896-24136951)
[»] chr4 (8 HSPs)
chr4 (27-160)||(54147652-54147785)
chr4 (21-131)||(16870622-16870731)
chr4 (255-305)||(16870321-16870371)
chr4 (255-306)||(16870490-16870541)
chr4 (32-110)||(42265415-42265492)
chr4 (83-160)||(16870624-16870701)
chr4 (21-63)||(54147873-54147915)
chr4 (88-156)||(42265431-42265498)
[»] chr2 (18 HSPs)
chr2 (15-156)||(38584089-38584234)
chr2 (51-165)||(1173572-1173686)
chr2 (15-160)||(1173475-1173619)
chr2 (51-160)||(1173541-1173650)
chr2 (62-176)||(38584105-38584219)
chr2 (31-137)||(38584136-38584246)
chr2 (15-96)||(1173289-1173369)
chr2 (27-131)||(8986184-8986287)
chr2 (255-306)||(38584348-38584399)
chr2 (31-130)||(1173583-1173682)
chr2 (15-96)||(1173382-1173462)
chr2 (82-160)||(32290562-32290644)
chr2 (255-306)||(8986052-8986103)
chr2 (110-176)||(32290581-32290647)
chr2 (83-160)||(8986186-8986263)
chr2 (127-156)||(1173308-1173337)
chr2 (51-133)||(32290558-32290644)
chr2 (62-95)||(32290651-32290684)
[»] chr1 (11 HSPs)
chr1 (21-94)||(15630034-15630107)
chr1 (28-129)||(2072366-2072466)
chr1 (28-129)||(2075896-2075996)
chr1 (70-141)||(19825094-19825165)
chr1 (36-110)||(19825091-19825165)
chr1 (65-126)||(15630047-15630108)
chr1 (101-157)||(15630052-15630108)
chr1 (81-139)||(2072388-2072446)
chr1 (89-176)||(19825082-19825165)
chr1 (21-96)||(15629942-15630016)
chr1 (81-139)||(2075918-2075976)
[»] chr6 (8 HSPs)
chr6 (257-307)||(13167256-13167306)
chr6 (21-130)||(13167363-13167470)
chr6 (20-96)||(21862244-21862319)
chr6 (255-307)||(21861871-21861923)
chr6 (19-96)||(21862147-21862223)
chr6 (88-148)||(13097915-13097975)
chr6 (15-96)||(28063535-28063615)
chr6 (22-63)||(28063633-28063674)
[»] chr8 (11 HSPs)
chr8 (15-96)||(20242151-20242231)
chr8 (21-92)||(20242063-20242133)
chr8 (21-92)||(20250934-20251004)
chr8 (21-127)||(20241937-20242041)
chr8 (21-127)||(20251026-20251130)
chr8 (255-305)||(20241816-20241866)
chr8 (83-137)||(20241957-20242011)
chr8 (83-133)||(20242053-20242103)
chr8 (83-133)||(20250964-20251014)
chr8 (83-137)||(20251056-20251110)
chr8 (255-305)||(20251201-20251251)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 50295671 - 50295498
Alignment:
Q  16 aaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacc 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||     
T  50295671 aaaggggggagaagaaaccaaattatgagtacttaactcaccaaacaatcaaagtacgagaactcaactcaccaaacaacccaagtgtgagcactcgact 50295572  T
Q  116 caccaaacaaacaaattgtgagcactcgactcactaaacaaacaaccaaattgtgtgcactatctcaactcatc 189  Q
    ||| |||||| ||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  50295571 cacgaaacaaccaaattgtgagcacttgacccactaaacaaacaatcaaattgtgtgcactatctcaactcatc 50295498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 50295422 - 50295370
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50295422 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagc 50295370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 42530813 - 42530739
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||||||||||||||| |||||||||||||||    
T  42530813 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaacc 42530739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 46692051 - 46692141
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgag 106  Q
    |||| ||| ||||||||||||||||||||| |||  ||||||||||||| | || |||||||| |  ||||||||||||||| || ||||||    
T  46692051 caaaagggagagaagaaaccaaattgtgagcactcgactcaccaaacaa-ctaaatgtgagaattagactcaccaaacaaccaaattgtgag 46692141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 42530783 - 42530734
Alignment:
Q  83 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaatt 132  Q
    |||||||||||||| ||||||||| ||||||| |||||||||| ||||||    
T  42530783 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaatt 42530734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 2593544 - 2593588
Alignment:
Q  116 caccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 160  Q
    ||||||| |||||||||||||||||| ||||||  ||||||||||    
T  2593544 caccaaagaaacaaattgtgagcacttgactcatcaaacaaacaa 2593588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 11828572 - 11828688
Alignment:
Q  25 agaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaaca 124  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| || | |||||||| |||||| || |||||||||| ||||||||||||     
T  11828572 agaagaaaccaaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattgtgagcacttgacccaccaaact 11828671  T
Q  125 aacaaattgtgagcact 141  Q
    |||||||||||||||||    
T  11828672 aacaaattgtgagcact 11828688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 21813934 - 21813823
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgac 114  Q
    |||| ||||||||| ||||||||||||| |||||||  ||||||| ||| |||| |||||| |||| ||||||||||||||| ||||||||||||| |||    
T  21813934 caaaagggggagaaaaaaccaaattgtgggtacttatttcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgac 21813835  T
Q  115 ccaccaaacaaa 126  Q
     |||||||||||    
T  21813834 tcaccaaacaaa 21813823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 46963810 - 46963919
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 120  Q
    |||||||||||||||||||||||| || |  |||||||||||| ||||||||||||| || ||||||||||||| | || | ||||  || |||||||||    
T  46963810 ggggagaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccacca 46963908  T
Q  121 aacaaacaaat 131  Q
    |||||||||||    
T  46963909 aacaaacaaat 46963919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 15623189 - 15623264
Alignment:
Q  20 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||  |||||||||||||||    
T  15623189 gggggagaagaaacaaaattgtgagcactcaactcaccaaacaatcaaa-tgtgagaactagactcaccaaacaacc 15623264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 15623096 - 15623171
Alignment:
Q  20 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    |||||||||||||| |||||||||| ||| |||||||||||||| |||| ||||||||||  |||||||||||||||    
T  15623096 gggggagaagaaacaaaattgtgagcactcaactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaacc 15623171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 11828581 - 11828676
Alignment:
Q  65 caaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 160  Q
    |||| |||||| ||| |||||||||||||||| || ||||||||| |||| ||||| |||| ||||||||||||||| ||| ||| |||| |||||    
T  11828581 caaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattgtgagcacttgacccaccaaactaacaa 11828676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 21813896 - 21813810
Alignment:
Q  84 tcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaaccaaattgtg 170  Q
    ||||||| ||||| || |||||||||||||| |||||||||| |||| |||||||||| ||||||| ||||||| || | |||||||    
T  21813896 tcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcaccaaacaaataaaccaattgtg 21813810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 44338554 - 44338474
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    |||| ||||||||||||||||||||||||| ||   |||||||| |||| |||| ||||||||||| |||||||||||||||    
T  44338554 caaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaacc 44338474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 44338456 - 44338386
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaac 92  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||||||||||||||| |||||||||||    
T  44338456 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaac 44338386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 44338364 - 44338260
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 120  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||| ||||||||||| ||||||||||||| | || | ||||  || |||||||||    
T  44338364 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagtgct-gacccacca 44338267  T
Q  121 aacaaac 127  Q
    |||||||    
T  44338266 aacaaac 44338260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 46964000 - 46964051
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaag 306  Q
    |||||||||||||||||||||||||||||  || |||||||| |||||||||    
T  46964000 tcaagacaacttgaagaaccaaaacgaacgtaaccaaacgaaccaagacaag 46964051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 46963840 - 46963917
Alignment:
Q  83 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 160  Q
    |||||||||||||| ||||||||| | ||||| |||||||||| |||||| ||||  || ||| ||| ||||||||||    
T  46963840 ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaa 46963917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 44338189 - 44338139
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaa 305  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| ||| ||||    
T  44338189 tcaagacaacttgaaaaaccaaaacaaacaaaaccaaacgaaccaaaacaa 44338139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 44338334 - 44338280
Alignment:
Q  83 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgag 137  Q
    |||||||||||||| || |||||| ||||||| |||||||||| |||||| ||||    
T  44338334 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgag 44338280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 44338426 - 44338376
Alignment:
Q  83 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattg 133  Q
    |||||||||||||| ||||||||| ||||||| |||||||| | |||||||    
T  44338426 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaattg 44338376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 9511892 - 9511777
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgac 114  Q
    |||| |||||| |||||| ||||||||||||| |||||||||||||||| |||| |||||| |||| ||||||||||||||| |||||||||||||||||    
T  9511892 caaaagggggataagaaatcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgac 9511793  T
Q  115 ccaccaaacaaacaaa 130  Q
     |||||||||||||||    
T  9511792 tcaccaaacaaacaaa 9511777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 9511876 - 9511751
Alignment:
Q  62 aatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaac 161  Q
    ||||||| |||||| | | |||||||||||||||| || |||||||||||||| |||||||||| | || |||||||||||||||||| ||||||||||     
T  9511876 aatcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaacaaa 9511777  T
Q  162 caaattgtgtgcactatctcaactca 187  Q
    | ||||||| | ||||||| ||||||    
T  9511776 cgaattgtgaggactatcttaactca 9511751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 11335377 - 11335490
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgac 114  Q
    |||| ||||||||||||||||||||||||| | |  ||||||||||||| ||||||||||| |||   | |||||||||| | || |||||||||| |||    
T  11335377 caaaagggggagaagaaaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgagtact--tcccaccaaacaaacaaattgtgagcacttgac 11335474  T
Q  115 ccaccaaacaaacaaa 130  Q
    || |||||||||||||    
T  11335475 ccgccaaacaaacaaa 11335490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 11335396 - 11335509
Alignment:
Q  65 caaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaaccaa 164  Q
    |||| |||||| | || ||||||||||||||| ||||||||| |||   |||||||||||||||||||||||||||| ||| | | |||||||||| | |    
T  11335396 caaattgtgagcattcgactcaccaaacaaccaaagtgtgagtactt--cccaccaaacaaacaaattgtgagcacttgacccgccaaacaaacaaacca 11335493  T
Q  165 attgtgtgcactatct 180  Q
    |||||| |||||||||    
T  11335494 attgtgagcactatct 11335509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 24136714 - 24136662
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagc 307  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  24136714 tcaagacaacttgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagc 24136662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 24137127 - 24137049
Alignment:
Q  16 aaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||||| |||| ||||||||||  |||||||||||||||    
T  24137127 aaaggggggagaa-aaaccaaattgtgagcactcaactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaacc 24137049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 24136969 - 24136894
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    |||| |||||||| |||||||||| |||  ||||||||||||| |||| |||||||| ||  ||||||||||||||    
T  24136969 ggggggaagaaacaaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaacc 24136894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 24137032 - 24136984
Alignment:
Q  20 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaa 68  Q
    ||||||||||||||||||||||||| |||  ||||||||||||| ||||    
T  24137032 gggggagaagaaaccaaattgtgagaactagactcaccaaacaaccaaa 24136984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 24136951 - 24136896
Alignment:
Q  101 tgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaa 156  Q
    |||||||||||||| |||||||||| ||||||||||| | ||| ||||| ||||||    
T  24136951 tgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaa 24136896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 54147785 - 54147652
Alignment:
Q  27 aagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaa 126  Q
    |||||||||||||||||| ||  |||||||||||||| |||| ||||||||||  ||||||||||||||  ||||||||||||  ||| |||||||||||    
T  54147785 aagaaaccaaattgtgagcaccaaactcaccaaacaaccaaaatgtgagaactagactcaccaaacaactaaagtgtgagcacctgactcaccaaacaaa 54147686  T
Q  127 caaattgtgagcactcgactcactaaacaaacaa 160  Q
    |||||| |||||||| ||| ||| ||||||||||    
T  54147685 caaattatgagcacttgacccaccaaacaaacaa 54147652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 16870731 - 16870622
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 120  Q
    |||||||||||||||||||||||| || |  |||||||||||| ||||||||||||| || ||||||||||||| | || | ||||  || |||||||||    
T  16870731 ggggagaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccacca 16870633  T
Q  121 aacaaacaaat 131  Q
    |||||||||||    
T  16870632 aacaaacaaat 16870622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 16870371 - 16870321
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaa 305  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  16870371 tcaagacaacttgaagaaccaaaacgaacaaaaccaaacgaaccaagacaa 16870321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 16870541 - 16870490
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaag 306  Q
    |||||||||||||||||||||||||||||  || |||||||| |||||||||    
T  16870541 tcaagacaacttgaagaaccaaaacgaacgtaaccaaacgaaccaagacaag 16870490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 42265492 - 42265415
Alignment:
Q  32 accaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcact 110  Q
    ||||||||||||| |||| | ||||||||||| |||| |||||| |||| ||||||||||||||| ||  |||||||||    
T  42265492 accaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaaccaaacagtgagcact 42265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 16870701 - 16870624
Alignment:
Q  83 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 160  Q
    |||||||||||||| ||||||||| | ||||| |||||||||| |||||| ||||  || ||| ||| ||||||||||    
T  16870701 ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaa 16870624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 54147915 - 54147873
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaa 63  Q
    |||||||||||||||||||||||| |||  |||||||||||||    
T  54147915 ggggagaagaaaccaaattgtgagcactcgactcaccaaacaa 54147873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 42265498 - 42265431
Alignment:
Q  88 caaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaa 156  Q
    ||||| ||| || |||||||||| ||  |||||||||| ||||||||||| ||||||||||| ||||||    
T  42265498 caaaccaccaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaa 42265431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 38584089 - 38584234
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcg-- 112  Q
    |||| ||||||||| ||| ||||||||||| | |||||||||||||||| |||| |||||| ||| |||||||||||| ||| || |||||||||| |      
T  38584089 caaaagggggagaaaaaatcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgac 38584188  T
Q  113 --acccaccaaacaaacaaattgtgagcactcgactcactaaacaa 156  Q
      ||| ||||||||| |||| |||||||||||||||||| ||||||    
T  38584189 tcaccaaccaaacaaccaaaatgtgagcactcgactcaccaaacaa 38584234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 1173572 - 1173686
Alignment:
Q  51 actcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcact 150  Q
    ||||||||||||| |||| | |||| |||| ||||||||||||| | || | |||||||||||||||||||||||||||||| |||||||| ||| |||     
T  1173572 actcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaacaaattatgagcacttgacccacc 1173671  T
Q  151 aaacaaacaaccaaa 165  Q
    |||||||||| ||||    
T  1173672 aaacaaacaaacaaa 1173686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 1173475 - 1173619
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgac 114  Q
    |||| ||| ||||||||||||||||||||| |||  ||||||||||||| |||||||||||  ||  ||||||||||||| | |  |||||||||| |||    
T  1173475 caaaagggcgagaagaaaccaaattgtgagcactagactcaccaaacaaccaaagtgtgagcgct-tactcaccaaacaaacaacatgtgagcactagac 1173573  T
Q  115 ccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 160  Q
     |||||||||| |||| | |||| ||||||||||| ||||||||||    
T  1173574 tcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaa 1173619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 1173541 - 1173650
Alignment:
Q  51 actcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcact 150  Q
    ||||||||||||| |||  |||||| |||  ||||||||||||||| || | |||| ||||||| ||||||||||||||||| |||||||||||| |||     
T  1173541 actcaccaaacaaacaacatgtgagcactagactcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccacc 1173640  T
Q  151 aaacaaacaa 160  Q
    ||||||||||    
T  1173641 aaacaaacaa 1173650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 38584105 - 38584219
Alignment:
Q  62 aatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaac 161  Q
    ||||||| |||||| | | |||||||||||||||| || ||||||||||  || |||||||| | ||||||||||||||| ||||||| || ||||||||    
T  38584105 aatcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcaccaaccaaacaac 38584204  T
Q  162 caaattgtgtgcact 176  Q
    |||| |||| |||||    
T  38584205 caaaatgtgagcact 38584219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 38584136 - 38584246
Alignment:
Q  31 aaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcacca----aacaacccaagtgtgagcactcgacccaccaaacaaa 126  Q
    |||||||||||||| |||||||||||||||| | |||| |||||| |||  ||||||||    ||||||| || |||||||||||||| ||||||||||     
T  38584136 aaccaaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcaccaaccaaacaaccaaaatgtgagcactcgactcaccaaacaag 38584235  T
Q  127 caaattgtgag 137  Q
    |||||||||||    
T  38584236 caaattgtgag 38584246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 1173289 - 1173369
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    |||| ||||||||||||||||||||||||| |||  |||||| ||||||||||| ||||||||||  |||||||||||||||    
T  1173289 caaaagggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaa-tgtgagaactagactcaccaaacaacc 1173369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 8986287 - 8986184
Alignment:
Q  27 aagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaa 126  Q
    |||||||||||||||||| || |  |||||||||||| ||||||||||||| || ||||||||||||| | || | ||||  || |||||||||||||||    
T  8986287 aagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaa 8986189  T
Q  127 caaat 131  Q
    |||||    
T  8986188 caaat 8986184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 38584348 - 38584399
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaag 306  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  38584348 tcaagacaacttgaagaaccaaaacgaacaaaaccaaacgaaccaagacaag 38584399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 1173583 - 1173682
Alignment:
Q  31 aaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaa 130  Q
    ||||||| | ||||||||  ||||||||||||| |||| | |||| |||| || |||||||||| | || | |||||||| |||||||||||||||||||    
T  1173583 aaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaacaaattatgagcacttgacccaccaaacaaacaaa 1173682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 1173382 - 1173462
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    |||| ||||||||||||||||||||||| | |||  ||||||||||||| |||| |||||||| |  |||||||||||||||    
T  1173382 caaaagggggagaagaaaccaaattgtgtgcactagactcaccaaacaaccaaa-tgtgagaattagactcaccaaacaacc 1173462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 32290644 - 32290562
Alignment:
Q  82 actcaccaaacaacccaagtgtgagcactcgacccaccaaacaaa----caaattgtgagcactcgactcactaaacaaacaa 160  Q
    ||||||||||||||| || |||||||||| ||||||||||| |||    ||||||||||||||| ||| ||| ||||||||||    
T  32290644 actcaccaaacaaccaaattgtgagcacttgacccaccaaaaaaataaccaaattgtgagcacttgacccaccaaacaaacaa 32290562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 8986103 - 8986052
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaag 306  Q
    |||||||||||||||||||||||||||||  || |||||||| |||||||||    
T  8986103 tcaagacaacttgaagaaccaaaacgaacgtaaccaaacgaaccaagacaag 8986052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 32290647 - 32290581
Alignment:
Q  110 tcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaaccaaattgtgtgcact 176  Q
    ||||| |||||||||| ||||||||||||||| ||| ||| ||| ||| |||||||||||| |||||    
T  32290647 tcgactcaccaaacaaccaaattgtgagcacttgacccaccaaaaaaataaccaaattgtgagcact 32290581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 8986263 - 8986186
Alignment:
Q  83 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 160  Q
    |||||||||||||| ||||||||| | ||||| |||||||||| |||||| ||||  || ||| ||| ||||||||||    
T  8986263 ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaa 8986186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Original strand, 1173308 - 1173337
Alignment:
Q  127 caaattgtgagcactcgactcactaaacaa 156  Q
    ||||||||||||||||||||||||||||||    
T  1173308 caaattgtgagcactcgactcactaaacaa 1173337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 32290644 - 32290558
Alignment:
Q  51 actcaccaaacaatcaaagtgtgagaactcaactcaccaaacaa----cccaagtgtgagcactcgacccaccaaacaaacaaattg 133  Q
    ||||||||||||| |||| |||||| |||  || ||||||| ||    || || |||||||||| ||||||||||||||||||||||    
T  32290644 actcaccaaacaaccaaattgtgagcacttgacccaccaaaaaaataaccaaattgtgagcacttgacccaccaaacaaacaaattg 32290558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 32290684 - 32290651
Alignment:
Q  62 aatcaaagtgtgagaactcaactcaccaaacaac 95  Q
    ||||||||||||||||||| ||||||||||||||    
T  32290684 aatcaaagtgtgagaactcgactcaccaaacaac 32290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 15630034 - 15630107
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaa 94  Q
    |||||||||||||||||||||||| |||  ||||||||||||| ||||||||||| |||| |||||||||||||    
T  15630034 ggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 2072366 - 2072466
Alignment:
Q  28 agaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaac 127  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||| |||| ||||| ||||||| | || |||||||| || ||||||| | |||||    
T  2072366 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcatcaaacaatcaaattgtgagcaatc-acccacccaccaaac 2072464  T
Q  128 aa 129  Q
    ||    
T  2072465 aa 2072466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 2075896 - 2075996
Alignment:
Q  28 agaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaac 127  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||| |||| ||||  ||||||||| || |||||||| || ||||||| | |||||    
T  2075896 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcgtcaaacaaccaaattgtgagcaatc-acccacccaccaaac 2075994  T
Q  128 aa 129  Q
    ||    
T  2075995 aa 2075996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 19825094 - 19825165
Alignment:
Q  70 tgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcact 141  Q
    |||||| ||| |||||||||||||||| || |||||||||||||| | |||||||| |||||||||||||||    
T  19825094 tgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgagcact 19825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 19825091 - 19825165
Alignment:
Q  36 aattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcact 110  Q
    ||||||||| |||||||||||||||||| |||| |||||| |||| |||| |||||||||| || ||||||||||    
T  19825091 aattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgagcact 19825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 15630047 - 15630108
Alignment:
Q  65 caaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaa 126  Q
    |||| |||||| |||| ||||||||||||||| ||||||||||||||||| |||||||||||    
T  15630047 caaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaaa 15630108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 15630052 - 15630108
Alignment:
Q  101 tgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaa 157  Q
    |||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||    
T  15630052 tgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaaa 15630108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 2072388 - 2072446
Alignment:
Q  81 aactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagca 139  Q
    |||||||||||||||| |||| |||||||||||| || ||||||| |||||||||||||    
T  2072388 aactcaccaaacaaccaaagtatgagcactcgactcatcaaacaatcaaattgtgagca 2072446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 19825082 - 19825165
Alignment:
Q  89 aaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaaccaaattgtgtgcact 176  Q
    |||||| |||| ||||||||||  || |||||||||| ||||||||||||||||||||| |    ||||||||||||||||| |||||    
T  19825082 aaacaaaccaattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgc----caaacaaccaaattgtgagcact 19825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 15629942 - 15630016
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    |||||||||||||||||||||||| |||  ||||||||||||| |||| |||||||| |  |||||| ||||||||    
T  15629942 ggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaa-tgtgagaattagactcactaaacaacc 15630016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 2075918 - 2075976
Alignment:
Q  81 aactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagca 139  Q
    |||||||||||||||| |||| |||||||||||| |  ||||||| |||||||||||||    
T  2075918 aactcaccaaacaaccaaagtatgagcactcgactcgtcaaacaaccaaattgtgagca 2075976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 13167306 - 13167256
Alignment:
Q  257 aagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagc 307  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  13167306 aagacaacttgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagc 13167256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 13167470 - 13167363
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 120  Q
    |||||||||| ||||||||||||| | |   |||| ||||||| ||||||||||||| || ||||||||||||| | || || ||||||| |||||||||    
T  13167470 ggggagaagacaccaaattgtgagca-tacgctcagcaaacaa-caaagtgtgagaattcgactcaccaaacaagcaaattgcgagcacttgacccacca 13167373  T
Q  121 aacaaacaaa 130  Q
    ||||||||||    
T  13167372 aacaaacaaa 13167363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 21862319 - 21862244
Alignment:
Q  20 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    ||||||||||||||||||||||||| |||  ||||||||||||| |||| ||||||| ||  |||||||||||||||    
T  21862319 gggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaa-tgtgagagctagactcaccaaacaacc 21862244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 21861923 - 21861871
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagc 307  Q
    |||||| |||||||||||||||||| ||||||| |||||||| ||||||||||    
T  21861923 tcaagataacttgaagaaccaaaacaaacaaaaccaaacgaaccaagacaagc 21861871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 21862223 - 21862147
Alignment:
Q  19 ggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    ||||||||| ||||||||||  |||| |||  ||||||||||||| |||| ||||||||||  |||||||||||||||    
T  21862223 ggggggagaggaaaccaaatattgagcactcgactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaacc 21862147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 13097975 - 13097915
Alignment:
Q  88 caaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactca 148  Q
    ||||||||| || |||||||||| | | || ||||||||||| ||||||||||||||||||    
T  13097975 caaacaaccaaattgtgagcacttgtctcaacaaacaaacaatttgtgagcactcgactca 13097915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 28063535 - 28063615
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    |||| ||||| ||||||| ||||||| ||| | | |||| ||||||||| |||| ||||||||||  |||||||||||||||    
T  28063535 caaaagggggtgaagaaatcaaattgggagaattcaacttaccaaacaaccaaa-tgtgagaactagactcaccaaacaacc 28063615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 28063633 - 28063674
Alignment:
Q  22 gggagaagaaaccaaattgtgagtacttaactcaccaaacaa 63  Q
    ||||||||||||||||||||||| || | |||||||||||||    
T  28063633 gggagaagaaaccaaattgtgagcacctgactcaccaaacaa 28063674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 20242231 - 20242151
Alignment:
Q  15 caaaggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 96  Q
    |||| ||||||||||||||||||||||||| ||   |||||||| |||| |||| ||||||||||| |||||||||||||||    
T  20242231 caaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaacc 20242151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 20242133 - 20242063
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaac 92  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||||||||||||||| |||||||||||    
T  20242133 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaac 20242063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 20250934 - 20251004
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaac 92  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||||||||||||||| |||||||||||    
T  20250934 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaac 20251004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 20242041 - 20241937
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 120  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||| ||||||||||| ||||||||||||| | || | ||||  || |||||||||    
T  20242041 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagtgct-gacccacca 20241944  T
Q  121 aacaaac 127  Q
    |||||||    
T  20241943 aacaaac 20241937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 20251026 - 20251130
Alignment:
Q  21 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 120  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||| ||||||||||| ||||||||||||| | || | ||||  || |||||||||    
T  20251026 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagtgct-gacccacca 20251123  T
Q  121 aacaaac 127  Q
    |||||||    
T  20251124 aacaaac 20251130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 20241866 - 20241816
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaa 305  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| ||| ||||    
T  20241866 tcaagacaacttgaaaaaccaaaacaaacaaaaccaaacgaaccaaaacaa 20241816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 20242011 - 20241957
Alignment:
Q  83 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgag 137  Q
    |||||||||||||| || |||||| ||||||| |||||||||| |||||| ||||    
T  20242011 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgag 20241957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 20242103 - 20242053
Alignment:
Q  83 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattg 133  Q
    |||||||||||||| ||||||||| ||||||| |||||||| | |||||||    
T  20242103 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaattg 20242053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 20250964 - 20251014
Alignment:
Q  83 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattg 133  Q
    |||||||||||||| ||||||||| ||||||| |||||||| | |||||||    
T  20250964 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaattg 20251014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 20251056 - 20251110
Alignment:
Q  83 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgag 137  Q
    |||||||||||||| || |||||| ||||||| |||||||||| |||||| ||||    
T  20251056 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgag 20251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 20251201 - 20251251
Alignment:
Q  255 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaa 305  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| ||| ||||    
T  20251201 tcaagacaacttgaaaaaccaaaacaaacaaaaccaaacgaaccaaaacaa 20251251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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