View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_28 (Length: 302)
Name: NF15673_low_28
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 36702332 - 36702611
Alignment:
| Q |
6 |
gagagaagaaactatcaataaacgaagactataaatattgaataacatcaagaaatgcttgattagattatatataatatcaaatctatagatgtatcca |
105 |
Q |
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| T |
36702332 |
gagagtagaaactatcaataaacgaagactataaattttgaataacatcaagaaatgcttgattagattatatataatatcaaatctatagatgtatcca |
36702431 |
T |
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| Q |
106 |
ttttacatcataatatccaaagaagtggccatgctctaaatttcaaatccttta-tatgcaaatcaacgattttgcaggagaaaaaccaaatataaaaag |
204 |
Q |
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| T |
36702432 |
ttttacatcataatatccaaagaagtgaccatgctctaaatttcaaattctttattatgcaaatcgacgattttgcaggaaaaaaaccaaatataaaaag |
36702531 |
T |
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| Q |
205 |
ttgttattcattgattgaaaaactatatcgtgaatccatattcaaaacatgattaataatctagtatattttccaaatct |
284 |
Q |
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| T |
36702532 |
ttgttattcattgattgaaaaactatatcgtgaatccatattcaaaacatgattaataacctagtatattttctaaatct |
36702611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 36720815 - 36720877
Alignment:
| Q |
222 |
aaaaactatatcgtgaatccatattcaaaacatgattaataatctagtatattttccaaatct |
284 |
Q |
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|||||||| || |||||||||||||| |||||||||||| | || |||||||||| |||||| |
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| T |
36720815 |
aaaaactaaattgtgaatccatattctcaacatgattaatgaccttgtatattttctaaatct |
36720877 |
T |
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