View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_3 (Length: 661)
Name: NF15673_low_3
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 16 - 643
Target Start/End: Original strand, 8651810 - 8652437
Alignment:
| Q |
16 |
cagccaacatagccaatctcccattcttaatttcctttgttctcaactccttaagcttctgaggagaaccacttccccaaccaagtggatcaaaccaaag |
115 |
Q |
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| T |
8651810 |
cagccaacatagccaatctcccattcttaatttcctttgttctcaactccttaagcttctgaggagaaccacttccccaaccaagtggatcaaaccaaag |
8651909 |
T |
|
| Q |
116 |
tccacccgggtatcctacatcagttcctgtgagcttgttgtttggaaagatagggtcagtgttgacacaacctggattgaggatgtcagcccaccttcta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8651910 |
tccacccgggtatcctacatcagttcctgtgagcttgttgtttggaaagatagggtcagtgttgacacaacctggattgaggatgtcagcccaccttcta |
8652009 |
T |
|
| Q |
216 |
ccctcagcccaaccgatgaaaatgagctcaactatgaagagtgtggtggtgtctgtgaaatactcttgctctccagcagtgtaccatgaaggtgtgttca |
315 |
Q |
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| T |
8652010 |
ccctcggcccaaccgatgaaaatgagctcaactatgaagagtgtggtggtgtctgtgaaatactcttgctctccagcagtgtaccatgaaggtgtgttca |
8652109 |
T |
|
| Q |
316 |
agataccaatctttgttaggaattctgggatgaaaattcctgctgctcccaacattgcccatctgcagtgcacaagctcggcttgaacattccatttcag |
415 |
Q |
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| T |
8652110 |
agataccaatctttgttaggaattctgggatgaaaattcctgctgctcccaacattgcccatctgcagtgcacaagctcggcttgaacattccatttcag |
8652209 |
T |
|
| Q |
416 |
actctctggatcagaggctgttgaatcacaaccaaaactttgattaatattatggtcatttgtattcccaacaatgaaaataagaccaccgttgtctcta |
515 |
Q |
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| T |
8652210 |
actctctggatcagaggctgttgaatcacaaccaaaactttgattaatattatggtcgtttgtattcccagcaaggataataagaccaccgttgtctcta |
8652309 |
T |
|
| Q |
516 |
aatacatgaccatgttgacgaaatcaagagaaattaagaaagttcgtagtaatattaaacttattaatagttgtttgttattgatttacaagtttactct |
615 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8652310 |
aatacatgaccatgttgacgaaatcaagaaaaattaagaaagttcgtagtaatattaaacttattaatagttgtttgttattgatttacaagtttactct |
8652409 |
T |
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| Q |
616 |
ttggaagagaaaattggtttatgtttcc |
643 |
Q |
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| T |
8652410 |
ttagaagagaaaattggtttatgtttcc |
8652437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 641
Target Start/End: Complemental strand, 2217669 - 2217623
Alignment:
| Q |
595 |
attgatttacaagtttactctttggaagagaaaattggtttatgttt |
641 |
Q |
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|||| |||||||||||||||||| ||||||| |||| |||||||||| |
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| T |
2217669 |
attgttttacaagtttactctttagaagagagaattagtttatgttt |
2217623 |
T |
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