View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_30 (Length: 273)
Name: NF15673_low_30
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_30 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 25535116 - 25534864
Alignment:
| Q |
21 |
gggacttgtttcatggcatgttagacgatcatacacctcccacttttcatgctgtcaactctgacacttttattttgatggtcgatgaatgcttgaagct |
120 |
Q |
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| T |
25535116 |
gggacttgtttcatggcatgttagacaatcatacacctcccacttttcatgctgtcaactctgacacttttattttgatggtcgatgaatgcttgaagct |
25535017 |
T |
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| Q |
121 |
tggtaaaattgatgaagcccttgcaactttgaagaaagttggaaccaagcctgattctaggccttttttcttggatattgatggcaactctaagctcatc |
220 |
Q |
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| T |
25535016 |
tggtaagattgatgaagcccttgcaactttgaagaaagttggaaccaagcctgattctaggccttttttcttggatattgatggcaactctaagctcatc |
25534917 |
T |
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| Q |
221 |
tccagtttccatgaatatgatatgttgtctgaagctgagaatatatttcaaga |
273 |
Q |
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| T |
25534916 |
tccagtttcgatgaatatgatatgttgtctgaagctgagaatctatttcaaga |
25534864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 25527084 - 25526832
Alignment:
| Q |
21 |
gggacttgtttcatggcatgttagacgatcatacacctcccacttttcatgctgtcaactctgacacttttattttgatggtcgatgaatgcttgaagct |
120 |
Q |
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||||||||||||||| |||||||||| |||| || ||| |||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
25527084 |
gggacttgtttcatgacatgttagacaatcacacgccttccacttttcatggtgtcgactctgacacttttactttgatggtcgaggaatgcttgaagct |
25526985 |
T |
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| Q |
121 |
tggtaaaattgatgaagcccttgcaactttgaagaaagttggaaccaagcctgattctaggccttttttcttggatattgatggcaactctaagctcatc |
220 |
Q |
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| T |
25526984 |
cggtaaggttgatgaagcccttgcaactttgaagaaagttggaaccaaacctgattctaagccttttttcttggatgttgatggctactgtcagctcatc |
25526885 |
T |
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| Q |
221 |
tccagtttccatgaatatgatatgttgtctgaagctgagaatatatttcaaga |
273 |
Q |
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| T |
25526884 |
tccattttctgtgcacatgatatgttgtctgaagctgagaatctatttcaaga |
25526832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 25515332 - 25515591
Alignment:
| Q |
21 |
gggacttgtttcatggcatgttagacgatcatacacctcccacttttcatgctgtcaactctgacacttttattttgatggtcgatgaatgcttgaagct |
120 |
Q |
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||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||| ||||| ||||||||||| |||||||| |||||||||| ||||| |
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| T |
25515332 |
gggacttgtttcatgacatgttagacaatcacacacctcccacttttcatggtgttgactctaacacttttattgtgatggtcaatgaatgcttcaagct |
25515431 |
T |
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| Q |
121 |
tggtaaaattgatgaagcccttgcaactttgaagaaag-------ttggaaccaagcctgattctaggccttttttcttggatattgatggcaactctaa |
213 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
25515432 |
tggtaaggttgatgaagcccttgcaactttgaagaaagttggaacttggaaccaagcctgattctaagccttttttcttggatgttgatggcaactctaa |
25515531 |
T |
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| Q |
214 |
gctcatctccagtttccatgaatatgatatgttgtctgaagctgagaatatatttcaaga |
273 |
Q |
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| T |
25515532 |
gctcatctcccttttctgtcataatgatatgttgtctgaagctgagaatctatttcaaga |
25515591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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