View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_32 (Length: 237)
Name: NF15673_low_32
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11729584 - 11729363
Alignment:
| Q |
1 |
aacaatatataggcaactgcttgcctctctctcgatgtaaatcaaaccaaacttgaattaagaaagtaaatatgaggcaacaaaattttaaaaattactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| | |||||||||| |
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| T |
11729584 |
aacaatatataggcaactgcttgcctctctctcgatgtaaatcaagccaaactttaaataagaaagtaaatatgaggcaacaaaattattaaaattactt |
11729485 |
T |
|
| Q |
101 |
tctaccttcaaacagtctatgtcatgagataacaaaatcatatcaaagagttagttgaatcagatgctactgaaaatttatttgcaaaagaatgaacaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729484 |
tctaccttcaaacagtctatgtcatgagataacaaaatcatattaaagagtaaattgaatcagatgctactgaaaatttatttgcaaaagaatgaacaca |
11729385 |
T |
|
| Q |
201 |
tgtcactggatatcacacaacc |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
11729384 |
tgtcactggatatcacacaacc |
11729363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23739896 - 23739675
Alignment:
| Q |
1 |
aacaatatataggcaactgcttgcctctctctcgatgtaaatcaaaccaaacttgaattaagaaagtaaatatgaggcaacaaaattttaaaaattactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| | |||||||||| |
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| T |
23739896 |
aacaatatataggcaactgcttgcctctctctcgatgtaaatcaagccaaactttaaataagaaagtaaatatgaggcaacaaaattattaaaattactt |
23739797 |
T |
|
| Q |
101 |
tctaccttcaaacagtctatgtcatgagataacaaaatcatatcaaagagttagttgaatcagatgctactgaaaatttatttgcaaaagaatgaacaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23739796 |
tctaccttcaaacagtctatgtcatgagataacaaaatcatattaaagagtaaattgaatcagatgctactgaaaatttatttgcaaaagaatgaacaca |
23739697 |
T |
|
| Q |
201 |
tgtcactggatatcacacaacc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
23739696 |
tgtcactggatatcacacaacc |
23739675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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