View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_4 (Length: 593)
Name: NF15673_low_4
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 42806890 - 42807236
Alignment:
| Q |
1 |
ttgcgggaaacagtgaatattgatcttcgaagtaattgagatttatttaaacatattcatttttgaacattttcttaaataattataaaattaccatata |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42806890 |
ttgcgggcaacagtgaatattgatcttcgaagtaattgagatttatttaaacatgttcatttttgaacattttcttaaataattacaaaattaccatata |
42806989 |
T |
|
| Q |
101 |
agatttttaaaaagaaacaagtgcaaacttatatgagagttttgccgatagaagccttcatcatgtccataaaatgtgtatctgcattttgtttatggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42806990 |
agatttttaaaaagaaacaagtgcaaacttatatgagagttttgccgatagaagccttcatcatgtccataaaatgtgtatctgcattttgtttatggag |
42807089 |
T |
|
| Q |
201 |
taaaaaataagtaatttagaagcctgaatgaaaagaaatataagaactaaaaatcttgaaattagattcatggtcaaaccaaactttgctacacatcaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42807090 |
taaaaaataagtaatttagaagcctgaatgaaaagaaatataagaactaaaaatcttgaaattagattcatggtcaaaccaaactttgctacacatcaac |
42807189 |
T |
|
| Q |
301 |
cacctaaatggtttctctaggctatgattccaaacgaccaaacctaa |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42807190 |
cacctaaatggtttctctaggctatgattccaaacgaccaaacctaa |
42807236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 348 - 472
Target Start/End: Original strand, 42807435 - 42807560
Alignment:
| Q |
348 |
attgtattttaccaaaaaaccactatctactatattaaagtagtattaactaaaggat-agttttgtaaatttgtttctactcgtttatttaacaaacaa |
446 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
42807435 |
attgtattttaccaaaaaatcactatctactattttaaactagtattaactaaaggattagttttgtaaatttgtttctactcatttatttaacaaacaa |
42807534 |
T |
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| Q |
447 |
caacaaaggttgttacagatctcatg |
472 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42807535 |
caacaaaggttgttacagatctcatg |
42807560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 349 - 472
Target Start/End: Original strand, 31152951 - 31153074
Alignment:
| Q |
349 |
ttgtattttaccaaaaaaccactatctactatattaaagtagtattaactaaaggatagttttgtaaatttgtttctactcgtttatttaacaaacaaca |
448 |
Q |
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||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
31152951 |
ttgtattttactaaaaaaccactatctactattttaaactagtattaactaaaggatagttttgtaaatttgtttctgctcatttatttaacaaacaaca |
31153050 |
T |
|
| Q |
449 |
acaaaggttgttacagatctcatg |
472 |
Q |
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| T |
31153051 |
acaaaggttgttacaaatcccatg |
31153074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 350 - 463
Target Start/End: Original strand, 25361436 - 25361549
Alignment:
| Q |
350 |
tgtattttaccaaaaaaccactatctactatattaaagtagtattaactaaaggatagttttgtaaatttgtttctactcgtttatttaacaaacaacaa |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
25361436 |
tgtattttaccaaaaaaccactatctactattttaaactagtgttaattaaaggatagttttgtaaatttatttctactaatttatttaacaaacaacaa |
25361535 |
T |
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| Q |
450 |
caaaggttgttaca |
463 |
Q |
| |
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|||||||| ||||| |
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| T |
25361536 |
caaaggtttttaca |
25361549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 41638034 - 41638134
Alignment:
| Q |
248 |
taaaaatcttgaaat-tagattcatggtcaaaccaaactttgctacac-atcaaccacctaaatggtttctct-aggctatgattccaaacgaccaaacc |
344 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||| ||| |||||| || | |||||| ||||| |||||||| |
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| T |
41638034 |
taaaaatcttgaaatctagattgatggtcaaaccaaactttgctggacgatcaaccacctaattggcttctctgagccaatgatttcaaacaaccaaacc |
41638133 |
T |
|
| Q |
345 |
t |
345 |
Q |
| |
|
| |
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|
| T |
41638134 |
t |
41638134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 463
Target Start/End: Complemental strand, 27754211 - 27754163
Alignment:
| Q |
411 |
tgtaaatttgtttctactcgtttatttaacaaacaacaacaaaggttgttaca |
463 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27754211 |
tgtaaatttgtttctactc----atttaacaaacaacaacaaaggttgttaca |
27754163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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