View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_40 (Length: 206)
Name: NF15673_low_40
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_40 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 20231244 - 20231041
Alignment:
| Q |
3 |
tgcatttgatgcaaattttttgtcaccaaaagctgcttcatctgaagttttgttcattgtagaaaacaataaactcatgaaactttttgggtttgcgact |
102 |
Q |
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| T |
20231244 |
tgcatttgatgcaaattttttgtcaccaaaagctgcttcatctgcagttttgttcattgtagaaaacaataaactcatgaaacttttcgggtttgcgact |
20231145 |
T |
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| Q |
103 |
ttgtcagtgttcaccaagttaaaagtaggtgttgtccttgcaaccgtggagaaaataaaggttgtcgaataccaaaccatacattacatgtaccaaacaa |
202 |
Q |
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| T |
20231144 |
ttgtcagtattcaacaagttaaaagtaggtgttgtccttgcaaccgtggagaaaataaaggttgtcgaataccaaaccatacattcattgtaccaaacaa |
20231045 |
T |
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| Q |
203 |
tacc |
206 |
Q |
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|||| |
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| T |
20231044 |
tacc |
20231041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 22125228 - 22125025
Alignment:
| Q |
3 |
tgcatttgatgcaaattttttgtcaccaaaagctgcttcatctgaagttttgttcattgtagaaaacaataaactcatgaaactttttgggtttgcgact |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22125228 |
tgcatttgatgcaaattttttgtcaccaaaagctgcttcatctgcagttttgttcattgtagaaaacaataaactcatgaaacttttcgggtttgcgact |
22125129 |
T |
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| Q |
103 |
ttgtcagtgttcaccaagttaaaagtaggtgttgtccttgcaaccgtggagaaaataaaggttgtcgaataccaaaccatacattacatgtaccaaacaa |
202 |
Q |
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| T |
22125128 |
ttgtcagtattcaacaagttaaaagtaggtgttgtccttgcaaccgtggagaaaataaaggttgtcgaataccaaaccatacattcattgtaccaaacaa |
22125029 |
T |
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| Q |
203 |
tacc |
206 |
Q |
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|||| |
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| T |
22125028 |
tacc |
22125025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 10403663 - 10403762
Alignment:
| Q |
5 |
catttgatgcaaattttttgtcaccaaaagctgcttcatctgaagttttgttcattgtagaaaacaataaactcatgaaactttttgggtttgcgacttt |
104 |
Q |
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|||| |||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| || ||||| |||||| |
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| T |
10403663 |
cattagatgcatattttttgtcaccaaaagctgcttcatttgaggttttgttcattgtagaaaacaataaactcatgaaattttgtgtgtttgagacttt |
10403762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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