View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_low_41 (Length: 202)
Name: NF15673_low_41
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 40268766 - 40268935
Alignment:
| Q |
20 |
acaacgacctcctcagcatcatcctccgctctaccataaacttctccaacaacacccaatacccaatcctcgttttccacaaaactccaacaaattcaaa |
119 |
Q |
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| T |
40268766 |
acaacgacctcctcagcatcatcctccgctctaccataaacttctccaacaacgcccaatacccaatcctcgttttccacaaaactccaacaaattcaaa |
40268865 |
T |
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| Q |
120 |
cacatttctctacaacaccatgatccgcggcatggtgtctaaagaccggttcaacaacgctgttcatctc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40268866 |
cacatttctctacaacaccatgatccgcggcatggtgtctaaagaccggttcaacaacgctgttcatctc |
40268935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 40258061 - 40258228
Alignment:
| Q |
22 |
aacgacctcctcagcatcatcctccgctctaccataaacttctccaacaacacccaatacccaatcctcgttttccacaaaactccaacaaattcaaaca |
121 |
Q |
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|||||||| ||||||||||| ||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40258061 |
aacgaccttctcagcatcattctccgctctaccatatccttctccaccaacccccaatacccaatcctccttttccacaaaactccaacaaattcaaaca |
40258160 |
T |
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| Q |
122 |
catttctctacaacaccatgatccgcggcatggtgtctaaagaccggttcaacaacgctgttcatctc |
189 |
Q |
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||||||||||| |||||||||||| ||| |||||||| ||||||||||||||| |||| ||||||||| |
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| T |
40258161 |
catttctctacgacaccatgatccacggtatggtgtccaaagaccggttcaacgacgcagttcatctc |
40258228 |
T |
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