View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15673_low_5 (Length: 543)
Name: NF15673_low_5
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 16499807 - 16499285
Alignment:
| Q |
1 |
tggtttagggggattaggagacatgttgtagagaaaagaatctttccaattagttgaagcttgtgaggtatatagagcaaaattactattatacataaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16499807 |
tggtttagggggattaggagacatgttgtagaggaaagaatctttccaattagttgaagcttgtgaggtatatagagcaaaattactattatacataaaa |
16499708 |
T |
|
| Q |
101 |
ggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttccttcaaaatactcactggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16499707 |
ggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttccttcaaaatactcacttgga |
16499608 |
T |
|
| Q |
201 |
tgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcgtgcacatggatcttcatcaatgttagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16499607 |
tgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcatgcacatggatcttcatcaatgttagc |
16499508 |
T |
|
| Q |
301 |
aagatctatcacagcaatagtataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggtagatgataaaatatatgaggg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16499507 |
aagatctatcacagcaatagtataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggtagatgataaaatatatgaggg |
16499408 |
T |
|
| Q |
401 |
attttggtaatccctgtatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactctttctgaatctgccatgcctttct |
500 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16499407 |
attttggtaatccctgcatcaacaagtcctttaacaccaagttttgtatcatcaaaagctttgagttcttttactctttctgaatctgccatgcctttct |
16499308 |
T |
|
| Q |
501 |
cttacttttcccttgtagtacta |
523 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
16499307 |
cttacttttcacttgtagtacta |
16499285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 81 - 492
Target Start/End: Original strand, 16442784 - 16443180
Alignment:
| Q |
81 |
aattactattatacataaagggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttc |
180 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| ||| ||| ||| |||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
16442784 |
aattactattatacacaaagggttttctttcacgagtgtaatatttctttttgacctcactatcttgctcaaaaaaccttaccaccccatctttcatttc |
16442883 |
T |
|
| Q |
181 |
cttcaaaatactcactgggatgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcgtgcacat |
280 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||| |||||||| | ||| |||||||||||||||||||| || || |||||||||| |||||| |
|
|
| T |
16442884 |
attcaacgtactcactgggatgccatgatttacaatctggaaaaatccaaatgtctctgatgcatctctaacactctcgacgacccttttgcatgcacac |
16442983 |
T |
|
| Q |
281 |
ggatcttcatcaatgttagcaagatctatcacagcaatagtataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggta |
380 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| ||| || ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
16442984 |
ggatcttcaagaatgttagcaagatctatcacaggaatag------ttgttgtgtccc----ct-----gactctgatgccttcttgattttatcaggta |
16443068 |
T |
|
| Q |
381 |
gatgataaaatatatgagggattttggtaatccctgtatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactctttc |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
16443069 |
gatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaatcttttagttcttttattctttc |
16443168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 16438651 - 16438188
Alignment:
| Q |
1 |
tggtttagggggattaggagacatgttgtagagaaaagaatctttccaattagttgaagcttgtgaggtatatagagcaaaattactattatacataaag |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||| | | |||| |||||||||| | |||| |||| ||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
16438651 |
tggtttaggtggattaggagccatgttgcataagaaagtatctttccaactggttggagct---gaggtgtatagattaaagttactattatacataaag |
16438555 |
T |
|
| Q |
101 |
ggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttccttcaaaatactcactggga |
200 |
Q |
| |
|
||| |||| || ||||| ||||||||||| || ||||||||||||||||||||||| || ||||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
16438554 |
ggtctttgttcgcgagtgtaaaattccttttttacctcactatcttgctcaaaaaaacttaccaccccatctttcatttcattcaaagtactcactggga |
16438455 |
T |
|
| Q |
201 |
tgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcgtgcacatggatcttcatcaatgttagc |
300 |
Q |
| |
|
||| |||||| |||||||||||||| || | ||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
16438454 |
tgccatgatttacaatctgaaaaaacccaaatgtctccgatgcatctctaacactttcaacaacccttttgcgtacacatggatctttatcaatgttagc |
16438355 |
T |
|
| Q |
301 |
aagatctatcacagcaatagtataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggtagatgataaaatatatgaggg |
400 |
Q |
| |
|
||||||||| | || |||||||||||||| ||| |||| ||||| ||| | | ||||||| ||||||| || ||| ||||| |
|
|
| T |
16438354 |
aagatctataaaaggaatagtataatttgttgcatccccggactc------------------gttggtgtgatcaggtggatgatagaacatacgaggg |
16438273 |
T |
|
| Q |
401 |
attttggtaatccctgtatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactctttctgaat |
485 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
16438272 |
atcttggtaatccctgcatcaacaagtcctttaacacccaattttgtttcatcaaaagcttttagtgtttttattctttctgaat |
16438188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 81 - 494
Target Start/End: Original strand, 16427190 - 16427588
Alignment:
| Q |
81 |
aattactattatacataaagggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttc |
180 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| ||| ||| ||| |||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
16427190 |
aattactattatacacaaagggttttctttcacgagtgtaatatttctttttgacctcactatcttgctcaaaaaaacttaccaccccatctttcatttc |
16427289 |
T |
|
| Q |
181 |
cttcaaaatactcactgggatgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcgtgcacat |
280 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||| |||||||| | | | ||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
16427290 |
attcaacgtactcactgggatgccatgatttacaatctggaaaaatccaaatatctctgatgcatctctaacactttcgacgacccttttgcgtgcacac |
16427389 |
T |
|
| Q |
281 |
ggatcttcatcaatgttagcaagatctatcacagcaatagtataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggta |
380 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| ||| || ||||| || |||||||||||||||||| | |||||||| |
|
|
| T |
16427390 |
ggatcttcaagaatgttagcaagatctatcacaggaatag------ttgttgtgtccc----ct-----gactctgatgccttcttggtgctatcaggtg |
16427474 |
T |
|
| Q |
381 |
gatgataaaatatatgagggattttggtaatccctgtatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactctttc |
480 |
Q |
| |
|
| ||||| || ||| |||||| || |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16427475 |
gttgatagaaaatacgagggacctttgtaatccctgcatcaacaagtcctctaacaccaagttttgtttcatcaaaagcttttagttcttttactctttc |
16427574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 16416194 - 16416504
Alignment:
| Q |
1 |
tggtttagggggattaggagacatgttgtagagaaaagaatctttccaattagttgaagcttgtgaggtatatagagcaaaattactattatacataaag |
100 |
Q |
| |
|
||||||||||||| |||||| ||||||| | || ||||||||||||||| ||| |||| ||| |||||||||||||| |||||||| || |||||| |
|
|
| T |
16416194 |
tggtttagggggaataggagccatgttgcaaaggaaagaatctttccaagtagc---agctggtgcggtatatagagcaatattactataatgcataaaa |
16416290 |
T |
|
| Q |
101 |
ggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttccttcaaaatactcactggga |
200 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| |||| |||||||||| | |
|
|
| T |
16416291 |
ggtttatgttcacgtgtataaaattccttcttgacctcactatcttgctcaaaaaaacttttcaccccatctttcatttcctccaaagtactcactggaa |
16416390 |
T |
|
| Q |
201 |
tgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcgtgcacatggatcttcatcaatgttagc |
300 |
Q |
| |
|
||| |||||| |||||||||||||| || | ||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
16416391 |
tgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaatactttcaacaaccctttttcgtgcgaatggatctttttcaatgttagc |
16416490 |
T |
|
| Q |
301 |
aagatctatcacag |
314 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16416491 |
gagatctatcacag |
16416504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 70 - 289
Target Start/End: Original strand, 16417562 - 16417781
Alignment:
| Q |
70 |
atatagagcaaaattactattatacataaagggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcaccactcca |
169 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||| | || |||||||| ||||||| ||| || |||||||||||||||||||| || || || ||| |
|
|
| T |
16417562 |
atatagattaaaattactattatacagaaaaggtctatgttcacgagtgtaaaatttcttttttacctcactatcttgctcaaagaaactttttacccca |
16417661 |
T |
|
| Q |
170 |
tctttcatttccttcaaaatactcactgggatgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaacccttt |
269 |
Q |
| |
|
||||| |||| || |||| |||||| |||||||| |||||| |||||||||||||| || | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16417662 |
tctttaattttctccaaagtactcagtgggatgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaacactttcaacaacccttt |
16417761 |
T |
|
| Q |
270 |
tgcgtgcacatggatcttca |
289 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
16417762 |
tccgtgcacatggatcttca |
16417781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 351 - 494
Target Start/End: Original strand, 16416526 - 16416669
Alignment:
| Q |
351 |
actctgatgccttcttgattttatcaggtagatgataaaatatatgagggattttggtaatccctgtatcaacaagtcctttaacaccaagttttgtttc |
450 |
Q |
| |
|
||||||||||||||||| | ||||| | | ||||| || ||| ||||||| || |||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
16416526 |
actctgatgccttcttggtgctatcacggggttgatagaaaatacgagggatctttgtaatccctgcatcgacaagtcctttaacaccaagttttgtttc |
16416625 |
T |
|
| Q |
451 |
atcaaaagtttttagttcttttactctttctgaatctgccatgc |
494 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| |||||| |
|
|
| T |
16416626 |
atcaaaagcttttagttcttttactctttctaaatcttccatgc |
16416669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 373 - 502
Target Start/End: Original strand, 16419727 - 16419856
Alignment:
| Q |
373 |
atcaggtagatgataaaatatatgagggattttggtaatccctgtatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttctttt |
472 |
Q |
| |
|
||||||| ||||||| || ||||||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||| ||| ||| |
|
|
| T |
16419727 |
atcaggtggatgatagaacatatgagggatcttggtaatccctgcatcaacaagtccttttacaccaaattttgtttcatcaaaagctttcagtattttc |
16419826 |
T |
|
| Q |
473 |
actctttctgaatctgccatgcctttctct |
502 |
Q |
| |
|
||||| ||||||||| |||| |||||||| |
|
|
| T |
16419827 |
actctctctgaatcttccatagctttctct |
16419856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 16432865 - 16432940
Alignment:
| Q |
422 |
acaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactc-tttctgaatctgccatgcct |
496 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
16432865 |
acaagtcctttaacaccaagttttttttcatcaaaagctttaagttcttttactcttttctaaatcttccatgcct |
16432940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 456
Target Start/End: Original strand, 28713667 - 28713753
Alignment:
| Q |
370 |
tttatcaggtagatgataaaatatatgagggattttggtaatccctgtatcaacaagtcctttaacaccaagttttgtttcatcaaa |
456 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||| ||| ||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
28713667 |
tttatcaggtggatgatgaaataaggtagggattttgagaataccttgatcaacaaggcctttaacaccagcttttgtttcatcaaa |
28713753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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