View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15674_high_6 (Length: 350)
Name: NF15674_high_6
Description: NF15674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15674_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 48 - 337
Target Start/End: Original strand, 832311 - 832604
Alignment:
| Q |
48 |
acaggcgatagagtagtgagaattggaggaattaagtaagggtatgatgtggtatgaggcccagtattacgttgaaagtttggtgcagccttattaaaag |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
832311 |
acaggcgatagagtagtgagaattggaggaa----gtaagggtatgatgtggtccgaggcccagtattacgttgaaagtttggtgcagctttattaaaag |
832406 |
T |
|
| Q |
148 |
tgagtgagtttctcttccacattttacttgtttgaatctatgt--------tacttcgtttatgttgttataataatagattgtgtgattgctttgctgc |
239 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
832407 |
tgagtgagtttctcttccacatttttcttgtttgaatctatgtatgttaattacttcgtttttgttgttataataatagattgtgtgattgctttgctgc |
832506 |
T |
|
| Q |
240 |
ttaattagcttctcggtattaattgttgagtaattatttattgaccattgtcttgttatttatgcttattgtaacttagataatgatattttctatat |
337 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
832507 |
ttaattagcttgtcggtattaattgttgagttattatttattgaccattttcttgttatttatgcttattgtaacttagatgatgatattttctatat |
832604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 10464584 - 10464640
Alignment:
| Q |
150 |
agtgagtttctcttccacattttacttgtttgaatctatgttacttcgtttatgttg |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||| ||||||| ||||||||| |
|
|
| T |
10464584 |
agtgagtttctcttccacatattacttgttagaatttatattacttcatttatgttg |
10464640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 10482487 - 10482528
Alignment:
| Q |
150 |
agtgagtttctcttccacattttacttgtttgaatctatgtt |
191 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
10482487 |
agtgagtttctcttccacatattacttgtttgaatttatgtt |
10482528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 10475519 - 10475575
Alignment:
| Q |
150 |
agtgagtttctcttccacattttacttgtttgaatctatgttacttcgtttatgttg |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||| ||| ||| | ||||||| |
|
|
| T |
10475519 |
agtgagtttctcttccacatattacttgtttgaatttatattatttcatgtatgttg |
10475575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 8443223 - 8443169
Alignment:
| Q |
151 |
gtgagtttctcttccacattttacttgtttgaatctatgttacttcgtttatgttg |
206 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| | ||||||||||| ||||||| |
|
|
| T |
8443223 |
gtgagtttctattccacattt-acttgtttgaatttttgttacttcgtgtatgttg |
8443169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 10468348 - 10468382
Alignment:
| Q |
150 |
agtgagtttctcttccacattttacttgtttgaat |
184 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
10468348 |
agtgagtttctcttccacatattacttgtttgaat |
10468382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University