View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15674_low_1 (Length: 505)
Name: NF15674_low_1
Description: NF15674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15674_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 38 - 488
Target Start/End: Complemental strand, 29598099 - 29597649
Alignment:
| Q |
38 |
aaacaatcttctggttccatatctggaacccggctacaaggataatatccaaaaaattaggaacttgtcaccaaccttgcaggccaggcaagctcacttt |
137 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
29598099 |
aaacagtcttctggttccatatctggaacccggctacaaggataatatccaaaaaattaggaacttgtcaccaaccttgcagaccaggcaagctaacttt |
29598000 |
T |
|
| Q |
138 |
ttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaa |
237 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
29597999 |
ttccttcgggtatgatatttcaactagaacttataatgctgtggttttgtgttctagggaggtgaaagttttccgtttcggtgataatatttggagaaaa |
29597900 |
T |
|
| Q |
238 |
attgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcatttgagtggcactattagctggatttcctttt |
337 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||| |
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| T |
29597899 |
attgtaagttttactccttataaccttcttgatacccttggctgtagttatgtgaaccaaggagtgcatttgagtggcactgttaactggatatccattt |
29597800 |
T |
|
| Q |
338 |
atccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccccctcctggagcagttaattc |
437 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||| || ||||||| |
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| T |
29597799 |
atctgaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaggaaattgttgccccctcctggtgctgttaattt |
29597700 |
T |
|
| Q |
438 |
agtgtcaccatatattgaaccaattattgctgttttgatggtccgcctttg |
488 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||||| ||| ||||||||| |
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|
| T |
29597699 |
agtgtcacgatatactgaaccaactattgctgttttgctggaccgcctttg |
29597649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 21 - 478
Target Start/End: Original strand, 29647180 - 29647639
Alignment:
| Q |
21 |
taatcatattcaggagaaaacaatcttctggttccatatctggaacccggctacaaggataatatccaaaaaattaggaacttgtcaccaaccttgcagg |
120 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29647180 |
taatcatattcagaagaaaacaatcttctggttccatatctggaacccggctacaaggataatatccaaaaaattaggaacttgtcaccaaccttgcaga |
29647279 |
T |
|
| Q |
121 |
ccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| || |
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| T |
29647280 |
ccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgccgtggttttgtgttctagtgaggtgaaagttttccgtttcggtg |
29647379 |
T |
|
| Q |
221 |
ataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaac---caaggagtgcatttgagtggcac |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||||| ||||||||| ||||||||||||| |
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|
| T |
29647380 |
ataatatttggagaaaaattgcaag-tttactccttataaccttgttgatacccttggccatagtgttgtgaaccaacaaggagtgtatttgagtggcac |
29647478 |
T |
|
| Q |
318 |
tattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccc |
417 |
Q |
| |
|
| ||| ||||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||| ||| ||| ||||||||||||||| ||||||| |
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|
| T |
29647479 |
tgttaattggatttccatttatccggaggatgttactcttgataaatttgcgattatctcgcttgatattggtaccgagacatacaagaaactgctaccc |
29647578 |
T |
|
| Q |
418 |
cctcctggagcagttaattcagtgtcaccatatattgaaccaattattgctgttttgatgg |
478 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
29647579 |
cctcctggagcagttaatttagtgccaccatatattgaaccaactattgctactttgatgg |
29647639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 468
Target Start/End: Original strand, 29641862 - 29642312
Alignment:
| Q |
21 |
taatcatattcaggagaaaacaatcttctggttccatatctggaacccggctacaaggataatatccaaaaaattaggaacttgtcaccaaccttgcagg |
120 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
29641862 |
taatcataatcaggatgaaacaatcttctggttccgtatctggaacccagccacaaggataatatcggaaaaattaggaacttgtcaccaaccttgcaat |
29641961 |
T |
|
| Q |
121 |
ccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatg |
220 |
Q |
| |
|
| |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| || |
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|
| T |
29641962 |
ttattcaagctcagtttttcattcgggtatgataattcaactagaacttataatgcggtggttttgtgtactagtgaggtgaaagttttccatttcggtg |
29642061 |
T |
|
| Q |
221 |
ataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaac---caaggagtgcatttgagtggcac |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| || |||||| || | ||||||| ||||||||| ||||||||||||| |
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|
| T |
29642062 |
ataatatttggagaaaaattgcaaattttactccttataaccttgttgatacccttggccatgatggtgtgaaccaacaaggagtgtatttgagtggcac |
29642161 |
T |
|
| Q |
318 |
tattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccc |
417 |
Q |
| |
|
| ||| ||||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||| |
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|
| T |
29642162 |
tgttaattggatttccatttatccggaggatgttactcttgataaatttgcgattatctcgcttgatcttggtaccgagacatacaagaaactgctaccc |
29642261 |
T |
|
| Q |
418 |
cctcctggagcagttaattcagtgtcaccatatattgaaccaattattgct |
468 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| |||||||| ||||||| |
|
|
| T |
29642262 |
cctcctggagcagttaatttagtgccaccatatactgaaccaactattgct |
29642312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 29821170 - 29821097
Alignment:
| Q |
21 |
taatcatattcaggagaaaacaatcttctggttccatatctggaacccggctacaaggataatatccaaaaaat |
94 |
Q |
| |
|
|||||||| || ||| |||| |||||||||||||| ||||||||||| || || ||||||||||||||||||| |
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|
| T |
29821170 |
taatcataatcgggatgaaacgatcttctggttccagatctggaacccagccactaggataatatccaaaaaat |
29821097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 317
Target Start/End: Complemental strand, 19326431 - 19326262
Alignment:
| Q |
145 |
gggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaa |
244 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | ||| ||||||||||||||||||||||| | || | |||||||||||||||||||||| ||| |
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|
| T |
19326431 |
gggtatgataattcaactggaacttataaggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttggagaaaaatttcaa |
19326332 |
T |
|
| Q |
245 |
gttttactccttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcatttgagtggcac |
317 |
Q |
| |
|
| ||| |||||| | ||| || || |||||||||| |||| | |||| |||||||| ||||||||||||| |
|
|
| T |
19326331 |
gctttcctccttttgaccatgctgttactcttggctttagtaa---gaacgaaggagtgtatttgagtggcac |
19326262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 19344811 - 19344749
Alignment:
| Q |
343 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
405 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
19344811 |
aaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19344749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 19374608 - 19374663
Alignment:
| Q |
350 |
ttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
405 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
19374608 |
ttactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19374663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 19326221 - 19326159
Alignment:
| Q |
343 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
405 |
Q |
| |
|
|||||| |||| || ||| ||||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
19326221 |
aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaag |
19326159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 26256620 - 26256671
Alignment:
| Q |
354 |
tgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
405 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| | || |||||||||||| |
|
|
| T |
26256620 |
tgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaag |
26256671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 24254881 - 24254770
Alignment:
| Q |
145 |
gggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaa |
244 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | | |||| |||| | ||||||||||| | || || ||||||||||||||||||||| ||| |
|
|
| T |
24254881 |
gggtatgataattcaactggaacttataaggtggtgttcatatgttatagtaaactgaaagttttcagtttgaaggataatatttggagaaaaatttcaa |
24254782 |
T |
|
| Q |
245 |
gttttactcctt |
256 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
24254781 |
ggtttcctcctt |
24254770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 24254662 - 24254600
Alignment:
| Q |
343 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
405 |
Q |
| |
|
|||||| |||| |||||| |||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
24254662 |
aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaag |
24254600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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