View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15674_low_11 (Length: 275)
Name: NF15674_low_11
Description: NF15674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15674_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 30770359 - 30770104
Alignment:
| Q |
1 |
ttgaaggagtcaaagatgaagatgatagactattttctagcataggtgaattaggtgttgaattcacagcattaacattatcaaaaacattcttaacctt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
30770359 |
ttgaaggagtcaaagatgatgatgataaactgttttctagcataggtgaattaggtgttgaattcacaacattaacattatcaagaacattcttaacctt |
30770260 |
T |
|
| Q |
101 |
attgttgttgttttcaagcagagtcagtgattctacttgagattctaagttattgcttgaatcaccactagcaggaacattatcaagattcacaaaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
30770259 |
attgttgttgttttcaagcagagtcaatgattctacttgagattccaagttattgcttgaat---cactagcaggaacactatcaagattcacaaaagaa |
30770163 |
T |
|
| Q |
201 |
tctcctgcagaatctgacacacctcttgagagaatccctgagttgttgagtgcatcaac |
259 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30770162 |
tctcctgctgaatctgacacacctcttgagagaatccctgagttgttgagtgcatcaac |
30770104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University