View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15674_low_12 (Length: 262)
Name: NF15674_low_12
Description: NF15674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15674_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 38737828 - 38737963
Alignment:
| Q |
53 |
tgtcacaagagttacaattaaatagttgtataaatataattactcccttgcaaaagtgatataccagggccaaagccctaaagggcaagggatcaaaagt |
152 |
Q |
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| T |
38737828 |
tgtcacaaaagttacaattaaatagttgtataaatataattactcccttgcaaaagtgatataccagggccaaagccctacagggcaagggatcaaaagt |
38737927 |
T |
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| Q |
153 |
caggacttataattcaaaatattattaaatcagttg |
188 |
Q |
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| T |
38737928 |
caggacttataattcaaaatattattaaatcagttg |
38737963 |
T |
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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 38738001 - 38738061
Alignment:
| Q |
197 |
acaagtattcaatttaaagtcattataaataaaatatagcataattccatttcatctcact |
257 |
Q |
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| T |
38738001 |
acaagtattcaatttaaagtcattataaataaaatatagcataattccatttcatttcact |
38738061 |
T |
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