View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15674_low_2 (Length: 478)
Name: NF15674_low_2
Description: NF15674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15674_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 10980121 - 10980507
Alignment:
| Q |
18 |
agaactaaatataatattgaaaaggaaattcttagaagaaattttttatggaacatatggttcttgaacttcaaagatgcatgatgggttgttatacatg |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10980121 |
agaactaaatataatcttgaaaaggaaattcttagaagaatttttttatggaacatatggttcttgaacttcaaagatgcatgatgggttgttatacatg |
10980220 |
T |
|
| Q |
118 |
acatgaaccattgagcaaagataagaaaaggaaaaaacaaagaatgacccaccactagaaagttcacataagaaacaatatttatggtggtacaggtaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10980221 |
acatgaaccattgagcaaagataagaaaaggaaaaaacaaa-aatgacccaccactagaaagttcacataagaaacaatatttatggtggtacaggtaaa |
10980319 |
T |
|
| Q |
218 |
attactatttcaacactgaacaataagtagacgtgaaggatgagaatggaggtagttggaaaaacagcgccagtgaacattaattaataacagtaccaca |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10980320 |
attactgtttcaacactgaacaataagtagacgtgaaggatgagaatggaggtagttggaaaaacagcgccagtgaacattaattaataacagtaccaca |
10980419 |
T |
|
| Q |
318 |
gataacaacagcagagtgaactcaatctatgtcaaatataaataaaaaatatatctatattattttatggtctgtgtgtaaataaatgtaa |
408 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10980420 |
gatagcaacagcag---gaactcaatctatgtcaaatataaataaaaaatatatctatattattttatggtctgtgtgtaaataaatgtaa |
10980507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University