View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15674_low_4 (Length: 419)
Name: NF15674_low_4
Description: NF15674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15674_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 40 - 402
Target Start/End: Original strand, 50124655 - 50125017
Alignment:
| Q |
40 |
gaaggctccattgacaacatgaagtcatacgaaaataattcaattgtttccttcaattttcaatgagttattattataaagatatgttttgatttttcca |
139 |
Q |
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| T |
50124655 |
gaaggctccattgacaacacgaagtcatacgaaaataattcaattgtttccttcaattttctatgagttattattataaagatatgttttgatttttcca |
50124754 |
T |
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| Q |
140 |
acctacttaagaatctccagctagctaactcgannnnnnnnnnngtgatcgaaggatcgatatcttgatgtaggaacatatataattgggtttattgttt |
239 |
Q |
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| T |
50124755 |
acctacttaagaatctccagctagctaactcgattttttttgttgtggttgaaggatggatatcttgatgtaggaacatatataattgggtttattgttt |
50124854 |
T |
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| Q |
240 |
caatatgtgatttatggtcaacttatgcaatataaaacaggggctttgttgtttaatctaacaaatatgctaaacaagttgtgttcattttgtttcctag |
339 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
50124855 |
caatttgtgatttatggtcaacttatgcaatataaaacaggggctttgttgtttaatctaacaaatatgctaaacaagttgcgttcattttgtttcctgg |
50124954 |
T |
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| Q |
340 |
ggcaaatccaattaattaatgaaacacattttaaatacgttacatcactttcactccacaaaa |
402 |
Q |
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| T |
50124955 |
ggcaaatccaattaattaatgaaacacattttaaatacgttacatcactttcactccacaaaa |
50125017 |
T |
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