View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15674_low_8 (Length: 285)
Name: NF15674_low_8
Description: NF15674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15674_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 31754412 - 31754154
Alignment:
| Q |
21 |
tacacgcgtgacacagacagattcattgttctcttgtttttgtgcatcataattcggacaacgcatattattgaaaagaaagttgaattgtcgccagaaa |
120 |
Q |
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| T |
31754412 |
tacacgcgtgacacagacagattcattgttctcttgtttttgtgcatcacaattttgacaacgcatattattgaaaagaaagttgaattgtcgccggaaa |
31754313 |
T |
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| Q |
121 |
aataaattaggtttctgatttttgcacctctagcccttacaagtggatttcatgtagtactcatgctaaatattgttcctttttattcaaaatttgtatt |
220 |
Q |
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| T |
31754312 |
aataaattaggtttctgatttttgcacttctagcccttacaagtggatttcatgtagtactcatgctaaatattgttcctttttattcaaaatttgtatt |
31754213 |
T |
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| Q |
221 |
tctatattaatttcaaacttattttgagttcaattatagttgaatcatattcatctcac |
279 |
Q |
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| T |
31754212 |
tctatattaatttcaaacttattttgagttcaattatagttgaatcatattcatgtcac |
31754154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 31761672 - 31761595
Alignment:
| Q |
202 |
tttattcaaaatttgtatttctatattaatttcaaacttattttgagttcaattatagttgaatcatattcatctcac |
279 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||| |||| |
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| T |
31761672 |
tttattcaaaatttatatttctatattaatttcaaacttattatgagttaaattataagtgcatcatattcatgtcac |
31761595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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