View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15674_low_9 (Length: 276)
Name: NF15674_low_9
Description: NF15674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15674_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 18318452 - 18318700
Alignment:
| Q |
19 |
tccatcaaataaatatccgtttcattccttctctatcaagcctcttagatagattctccaacttccactctcttcacctcacataccacttcaaagttaa |
118 |
Q |
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| T |
18318452 |
tccattaaataaatatccgtttcgttccttctctatcaagcctcttagatagattctccaacctccactctcttcacctcacataccacttcaaagttaa |
18318551 |
T |
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| Q |
119 |
cctcaatatgcttctctgccaaatctctactctcccgttgaagaatctcacatcgctccattttttctgttactataacctctttcccgcggatgggctg |
218 |
Q |
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| T |
18318552 |
cctaaatatgcttctctgccaaatctctactctcccgttgaagaatctcacatcgctccattttttctgttactataacctctttcccgcggatgggctg |
18318651 |
T |
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| Q |
219 |
cgagttttctgcaaaaatattacaactttgacctcactcacaggttctg |
267 |
Q |
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| T |
18318652 |
cgagttttctgcaaaaatattacaactttgacctcactcacatgttctg |
18318700 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 6596224 - 6596284
Alignment:
| Q |
199 |
tctttcccgcggatgggctgcgagttttctgcaaaaatattacaactttgacctcactcac |
259 |
Q |
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| T |
6596224 |
tctttcccgctgacgggttgcgagttttctcccaaaacataacaactttgacctctctcac |
6596284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 29021864 - 29021804
Alignment:
| Q |
199 |
tctttcccgcggatgggctgcgagttttctgcaaaaatattacaactttgacctcactcac |
259 |
Q |
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| T |
29021864 |
tctttcccgcagatggtttgcgagctttcagcaaaaacattactactttgacctctctcac |
29021804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 8186382 - 8186414
Alignment:
| Q |
233 |
aaatattacaactttgacctcactcacaggttc |
265 |
Q |
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| T |
8186382 |
aaatattacaactttgacctcactcacatgttc |
8186414 |
T |
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