View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15675_low_1 (Length: 472)
Name: NF15675_low_1
Description: NF15675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15675_low_1 |
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| [»] scaffold0059 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 97 - 456
Target Start/End: Original strand, 45547376 - 45547735
Alignment:
| Q |
97 |
agtacggtctggattggcttcctccttttcacttattttaatattttcagagaaaccatcttcaccgtaaggaaagatcaaaggatattgtaatggaata |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45547376 |
agtacggtctggattggcttcctccttttcacttattttaatattttcagagaaaccatcttcaccgtaaggaaagatcaaaggatattgtaatggaata |
45547475 |
T |
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| Q |
197 |
aaggaagtatgtgtctcatgaagtctttccaaatgacctgattcctttctaacgataatatcacttccatattctatactgtcagtatctccgacaatta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45547476 |
aaggaagtatgtgtctcatgaagtctttccaaatgacctgattcctttctaatgataatatctcttccatattctatactgtcagtatctccgacaatta |
45547575 |
T |
|
| Q |
297 |
gagctgccacctcatcaacttctggtatgttgtgcatcctagcatcctttgaacgatttctcgtcaacctcaaacaaaaatcagaagttatattttgttc |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
45547576 |
gagctgccacctcatcaacttctggtatgttgtgcatcctagcatcctttgaacgatttctcgtcaacctcaaacaaaaatcagatgttacattttgttc |
45547675 |
T |
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| Q |
397 |
aactaaatcacgaacttttctgaaattctttgcgagacgattatgtctatcaatcatctg |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45547676 |
aactaaatcacgaacttttctgaaattctttgcgagacgattatgtctatcaatcatctg |
45547735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 45531529 - 45531586
Alignment:
| Q |
18 |
tttaaaacacaggaaatactttcttttatgaatttgtttatggaggataaagagatgg |
75 |
Q |
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| T |
45531529 |
tttaaaacacataaaatactttctcttatgaatttgtttatggaggagaaagagatgg |
45531586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 67071 - 67117
Alignment:
| Q |
18 |
tttaaaacacaggaaatactttcttttatgaatttgtttatggagga |
64 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
67071 |
tttaaaacacagaaaatactttcttttatgaatttgtttatggagga |
67117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 75176 - 75222
Alignment:
| Q |
18 |
tttaaaacacaggaaatactttcttttatgaatttgtttatggagga |
64 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
75176 |
tttaaaacacagaaaatactttcttttatgaatttgtttatggagga |
75222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 20919500 - 20919454
Alignment:
| Q |
18 |
tttaaaacacaggaaatactttcttttatgaatttgtttatggagga |
64 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20919500 |
tttaaaacacagaaaatactttcttttatgaatttgtttatggagga |
20919454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 20928462 - 20928416
Alignment:
| Q |
18 |
tttaaaacacaggaaatactttcttttatgaatttgtttatggagga |
64 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20928462 |
tttaaaacacagaaaatactttcttttatgaatttgtttatggagga |
20928416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 1607857 - 1607903
Alignment:
| Q |
18 |
tttaaaacacaggaaatactttcttttatgaatttgtttatggagga |
64 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
1607857 |
tttaaaacacagaaaatacttttttttatgaatttgtttatggagga |
1607903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 35648204 - 35648158
Alignment:
| Q |
18 |
tttaaaacacaggaaatactttcttttatgaatttgtttatggagga |
64 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
35648204 |
tttaaaacacagaaaattctttcttttatgaatttgtttatggagga |
35648158 |
T |
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