View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15675_low_2 (Length: 433)
Name: NF15675_low_2
Description: NF15675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15675_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Complemental strand, 4928332 - 4927920
Alignment:
| Q |
16 |
tttttcatatgctatttaatttgtttatttgtttctttccatctagaggagtttcttcttaattaggatcatatttttcttaattaggatcatgagcttc |
115 |
Q |
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| T |
4928332 |
tttttcatatgctatttaatttctttatttgtttctttccatctagaggagtttcttcttaattaggatcatatttttcttaattaggatcatgagtttc |
4928233 |
T |
|
| Q |
116 |
atttcttcttcatatatatgtttcctccaagcacaacttgttgaagatttcttggtcaattcataacttctgtactttcattaaagagaaaatttcacta |
215 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4928232 |
atttcttcttcatatatatgtttcctccaagcacagcttgttgaagatttcttggtcaattcataacttctgtactttcattaaagagaaaatttcacta |
4928133 |
T |
|
| Q |
216 |
cttgattttttcttctgaagtttatgtataatttctttctaatcttatcaagatgtgtttaatttgtgtatgatataaatgatgagttgcactgtctttt |
315 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4928132 |
cttgattttttcttctgaagtttctgtataatttctttctaatcttatcaagatgtgtttaatttgtgtatgatataaatgatgagttgcactgtctttt |
4928033 |
T |
|
| Q |
316 |
gaataatcctttcttctcatggatgcggtgcagtcatatcttctactcatgttttcttgtaaaaaataaaacttagggataccttgttcatat-atcaga |
414 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4928032 |
gaataatcctttctcctcatggatgcggtgcggtcatatcttctactcatgttttcttgtaaaaaataaaacttagggataccttgttcatataatcaga |
4927933 |
T |
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| Q |
415 |
aacttcatctcac |
427 |
Q |
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||||||||||||| |
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| T |
4927932 |
aacttcatctcac |
4927920 |
T |
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