View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15675_low_4 (Length: 305)
Name: NF15675_low_4
Description: NF15675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15675_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 49 - 292
Target Start/End: Complemental strand, 32248538 - 32248292
Alignment:
| Q |
49 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggagatggaatgttgtccttattgagaagaggtttggaacttcccttcaat |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32248538 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtagaaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaat |
32248439 |
T |
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| Q |
149 |
gaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatc---ttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
245 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32248438 |
gaggtaatgtagaagttgcttctttttttataagtcttttttgatgtaccatctaattggtgaaggaaatgcttttgagcatggctagcaacttgacttg |
32248339 |
T |
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| Q |
246 |
cagttcttgtacgaacatgttgtgaaatctttttccaatttcccttc |
292 |
Q |
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| T |
32248338 |
cagttcttgtacgaacatgttgtgaaatcattttccaatttcccttc |
32248292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 49 - 292
Target Start/End: Complemental strand, 32236344 - 32236098
Alignment:
| Q |
49 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggagatggaatgttgtccttattgagaagaggtttggaacttcccttcaat |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32236344 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtagaaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaat |
32236245 |
T |
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| Q |
149 |
gaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatc---ttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
245 |
Q |
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| T |
32236244 |
gaggtaatgtagaagttgcttctttttttataagtcttttttgatgtaccatctaattggtgaaggaaatgcttttgagcatggctagcaacttgacttg |
32236145 |
T |
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| Q |
246 |
cagttcttgtacgaacatgttgtgaaatctttttccaatttcccttc |
292 |
Q |
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| T |
32236144 |
cagttcttgtacgaacatgttgtgaaatcagtttccactttcccttc |
32236098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 37 - 273
Target Start/End: Complemental strand, 32254745 - 32254509
Alignment:
| Q |
37 |
aggagatggaatgttgtccttatagagaagagggtggaaatttccatcccatgaggtaggagga---gatggaatgttgtccttattgagaagaggtttg |
133 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||| ||| |
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| T |
32254745 |
aggaaatggaatgttgtccttatagagaagagggtggaaatttccatcccatgtaggaggaggaggggatggaatgttgtccttatagagaagagggttg |
32254646 |
T |
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| Q |
134 |
gaacttcccttcaatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatcttggtgaaggaaatgcttttgagcatgactag |
233 |
Q |
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||| ||| |||||||||||||||| ||||||||| | ||| |||||||||||| || || |||||||||||||||||| |||| ||| |
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| T |
32254645 |
gaatctccattcaatgaggtaatgtcaaagttgctt---tttcttttagttttttttgatgtagcactatgatgaaggaaatgcttttgatcatggctac |
32254549 |
T |
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| Q |
234 |
caacttgacttgcagttcttgtacgaacatgttgtgaaat |
273 |
Q |
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| T |
32254548 |
caacttgacttggagtttttgtactaagatgttctgaaat |
32254509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 32236317 - 32236239
Alignment:
| Q |
16 |
atttccatcccatgaggtagaaggagatggaatgttgtccttatagagaagagggtggaaatttccatcccatgaggta |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||| | | |||||||| |
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| T |
32236317 |
atttccatcccatgaggtagaaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaatgaggta |
32236239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 32248511 - 32248433
Alignment:
| Q |
16 |
atttccatcccatgaggtagaaggagatggaatgttgtccttatagagaagagggtggaaatttccatcccatgaggta |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||| | | |||||||| |
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| T |
32248511 |
atttccatcccatgaggtagaaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaatgaggta |
32248433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 37027805 - 37027885
Alignment:
| Q |
211 |
gaaatgcttttgagcatgactagcaacttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttccctt |
291 |
Q |
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|||||||||||||||||| |||||||||||| ||| |||| |||||| ||||||||||| ||||||| |||| |||||||| |
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| T |
37027805 |
gaaatgcttttgagcatggctagcaacttgagttgtagtttttgtaccaacatgttgtgcaatctttatccattttccctt |
37027885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 37027670 - 37027724
Alignment:
| Q |
37 |
aggagatggaatgttgtccttatagagaagagggtggaaatttccatcccatgag |
91 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
37027670 |
aggagatggaatgttgtccctatagagaagagggtgaaaatttccatcccatgag |
37027724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 23193955 - 23193907
Alignment:
| Q |
53 |
tccttatagagaagagggtggaaatttccatcccatgaggtaggaggag |
101 |
Q |
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| T |
23193955 |
tccttatagagaagaggttggaaatttccatcccataaggtatgaggag |
23193907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 23193803 - 23193760
Alignment:
| Q |
202 |
ttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
245 |
Q |
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| T |
23193803 |
ttggtgaaggaaagtcttttgagcatggctagcaacttgacttg |
23193760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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