View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15675_low_5 (Length: 305)

Name: NF15675_low_5
Description: NF15675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15675_low_5
NF15675_low_5
[»] chr2 (7 HSPs)
chr2 (18-265)||(2327228-2327475)
chr2 (18-265)||(2294060-2294307)
chr2 (18-265)||(2321375-2321622)
chr2 (18-265)||(2310391-2310638)
chr2 (18-263)||(2351249-2351494)
chr2 (18-265)||(2303673-2303920)
chr2 (20-258)||(2330945-2331183)
[»] chr8 (2 HSPs)
chr8 (18-265)||(41127255-41127505)
chr8 (71-187)||(26494893-26495009)
[»] chr4 (1 HSPs)
chr4 (54-101)||(55017070-55017117)
[»] chr5 (1 HSPs)
chr5 (65-186)||(15176287-15176408)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 2327228 - 2327475
Alignment:
Q  18 agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  2327228 agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctggtaggagaatttgtcc 2327327  T
Q  118 gggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatgtcgatttgtcg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  2327328 gggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccggagggtggccatgtcgatttgtca 2327427  T
Q  218 gaaaaatttgaattcaccgtggtgatgcaaaatccattgcaagttcat 265  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2327428 gaaaaatttgaattcaccgtggtgatgaaaaatccattgcaagttcat 2327475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 2294060 - 2294307
Alignment:
Q  18 agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  2294060 agtttaagccagaaaggtttttgaaggatgagacttttgacattacaggaagtaaagagataaagatgatgccgtttggagctggaagaagaatttgtcc 2294159  T
Q  118 gggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatgtcgatttgtcg 217  Q
     |||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||| ||    
T  2294160 cggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcgattggaaggttccagagggcgggcatgttgatttgacg 2294259  T
Q  218 gaaaaatttgaattcaccgtggtgatgcaaaatccattgcaagttcat 265  Q
    |||| |   ||||||||| |||||||| ||||||||||||||||||||    
T  2294260 gaaatacaagaattcaccatggtgatgaaaaatccattgcaagttcat 2294307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 2321375 - 2321622
Alignment:
Q  18 agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  || |||||||||||    
T  2321375 agtttaagccagaaaggtttttgaaggatgagacttttgatattatagggagtaaagagataaagatgatgccgtttggagctggaaggagaatttgtcc 2321474  T
Q  118 gggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatgtcgatttgtcg 217  Q
     |||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| || |||| |||||||||||||| |||||||||    
T  2321475 cggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcaattggcagcttccggagggtggccatgttgatttgtcg 2321574  T
Q  218 gaaaaatttgaattcaccgtggtgatgcaaaatccattgcaagttcat 265  Q
    ||||||  |||||||||  |||||||| ||||||||||||||||||||    
T  2321575 gaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcat 2321622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 2310391 - 2310638
Alignment:
Q  18 agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc 117  Q
    |||||||||||||||||||||||||||||||||||||||  ||| |||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  2310391 agtttaagccagaaaggtttttgaaggatgagacttttgtcattccaggaagtaaagagataaagatgatgccgtttggagctggaagaagaatttgtcc 2310490  T
Q  118 gggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatgtcgatttgtcg 217  Q
     |||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| ||    
T  2310491 cggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatgttgatttgacg 2310590  T
Q  218 gaaaaatttgaattcaccgtggtgatgcaaaatccattgcaagttcat 265  Q
    |||| |   ||||||||  |||||||| |||||||| |||||||||||    
T  2310591 gaaatacaagaattcactatggtgatgaaaaatccagtgcaagttcat 2310638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 2351249 - 2351494
Alignment:
Q  18 agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc 117  Q
    ||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| ||||||||||| ||||| | || ||| ||||| |||||    
T  2351249 agtttaagccagagaggtttttgaaggatgaaacatttgacattacggggagtaaagagataaagatgatgccatttggtgttggtaggagaatctgtcc 2351348  T
Q  118 gggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatgtcgatttgtcg 217  Q
     ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  2351349 cggatataatttagctttgcttcacttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatgttgatttgtcg 2351448  T
Q  218 gaaaaatttgaattcaccgtggtgatgcaaaatccattgcaagttc 263  Q
    ||||||   |||||||| ||||||||| ||||||||||||||||||    
T  2351449 gaaaaacaagaattcactgtggtgatgaaaaatccattgcaagttc 2351494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 2303673 - 2303920
Alignment:
Q  18 agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc 117  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||| |||||| || |||||||||||    
T  2303673 agtttaagccagaaaggttttggaaggatgagaattttgacattacagggagtaaggagataaagatgatgccgtttgaagctgaaaggagaatttgtcc 2303772  T
Q  118 gggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatgtcgatttgtcg 217  Q
     | |  |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| |||||||||    
T  2303773 tgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttggaatttcgattggaagcttccagagggcggctatgttgatttgtcg 2303872  T
Q  218 gaaaaatttgaattcaccgtggtgatgcaaaatccattgcaagttcat 265  Q
    ||||||   |||||||   |||||||| ||||||||||||||||||||    
T  2303873 gaaaaacaagaattcaatatggtgatgaaaaatccattgcaagttcat 2303920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 2330945 - 2331183
Alignment:
Q  20 tttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtccgg 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||  || ||||||||||| |    
T  2330945 tttaagccagaaaggtttttgaaggatgagacttttgacattacaggaagtaaagagataaagatgatgccatttggagctgggaggagaatttgtcctg 2331044  T
Q  120 gatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatgtcgatttgtcgga 219  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |  || |||||||| ||    
T  2331045 gatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttcccgagggtggtcgcgttgatttgtcaga 2331144  T
Q  220 aaaatttgaattcaccgtggtgatgcaaaatccattgca 258  Q
     |||   ||||||||  |||| ||| |||||||||||||    
T  2331145 gaaacaggaattcactatggtcatgaaaaatccattgca 2331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 41127255 - 41127505
Alignment:
Q  18 agtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtcc 117  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||||| ||  || |||||||||||    
T  41127255 agtttaaaccagaaaggtttttgaaggatgaggcttttgatattaccgggactaaagagataaagatgatgccgtttggagttgggaggagaatttgtcc 41127354  T
Q  118 gggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaggg---tggccatgtcgatttg 214  Q
     ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||  |||||||| ||| ||||||   |||  |||| ||||||    
T  41127355 tggatataatttagctttgctccatttggaatactttgtggctaatttggtctggaattttaattggaagattctagagggagctggttatgttgatttg 41127454  T
Q  215 tcggaaaaatttgaattcaccgtggtgatgcaaaatccattgcaagttcat 265  Q
    |||||||||  ||||||||||||||| ||| |||||||| |||||||||||    
T  41127455 tcggaaaaaactgaattcaccgtggttatgaaaaatccactgcaagttcat 41127505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 26494893 - 26495009
Alignment:
Q  71 aaagagatcaagatgatgccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggttt 170  Q
    |||||||| |||||||||||||||||||| |  || || |||||||| |  ||||| || ||  | |||||||| ||||| ||||| |||||||||||||    
T  26494893 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 26494992  T
Q  171 ggaatttcgattggaag 187  Q
     ||| || || ||||||    
T  26494993 tgaactttgagtggaag 26495009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 55017070 - 55017117
Alignment:
Q  54 ttgatattacagggagtaaagagatcaagatgatgccgtttggagctg 101  Q
    ||||||||||||| | ||||||||| ||||||||||||||||| ||||    
T  55017070 ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctg 55017117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 15176408 - 15176287
Alignment:
Q  65 gggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatt 164  Q
    |||||||||||||| ||||||||||| |||||||| |  || ||||| ||||| || |||  |||||| ||  | || |||||||| ||||| || ||||    
T  15176408 gggagtaaagagataaagatgatgccatttggagcagggaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaatt 15176309  T
Q  165 tggtttggaatttcgattggaa 186  Q
    | |||| |||||| || |||||    
T  15176308 ttgttttgaattttgagtggaa 15176287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University