View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15675_low_6 (Length: 245)
Name: NF15675_low_6
Description: NF15675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15675_low_6 |
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| [»] chr5 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 41715879 - 41716123
Alignment:
| Q |
1 |
ataataatacatcaaatattgtaaccaaggtttcactaccattgtggatgcaatacaattttacaagttacaatgcgtttctatccattttggggtgatc |
100 |
Q |
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| T |
41715879 |
ataataatacatcaaatattgtaaccaaggtttcactaccattgtggatgcaatacaattttacaagttacaatgcgtttctatccattttggggtgatc |
41715978 |
T |
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| Q |
101 |
gccccaaatggattcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatgatgcatggttgatccaactcgagg |
200 |
Q |
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| T |
41715979 |
gccccaaatggattcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatgatgcatggttgatccaactcgagg |
41716078 |
T |
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| Q |
201 |
gagaagcacaatttgctgtgacccaaaggtcatttgctaggagac |
245 |
Q |
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| T |
41716079 |
gagaagcacaatttgctgtgacccaaatgtcatttgctaggagac |
41716123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 41706076 - 41706320
Alignment:
| Q |
1 |
ataataatacatcaaatattgtaaccaaggtttcactaccattgtggatgcaatacaattttacaagttacaatgcgtttctatccattttggggtgatc |
100 |
Q |
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| T |
41706076 |
ataattatacctcaaatattgtaaccaaagttgcgctacccgtgtagatgctatactattttacaagctacaatgggtttctatccattttgcagtgatc |
41706175 |
T |
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| Q |
101 |
gccccaaatggattcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatgatgcatggttgatccaactcgagg |
200 |
Q |
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| T |
41706176 |
gccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgatgcatggttgatgtaactcgatg |
41706275 |
T |
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| Q |
201 |
gagaagcacaatttgctgtgacccaaaggtcatttgctaggagac |
245 |
Q |
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| T |
41706276 |
gagaagaacaattggctgtgacccaaaggtcatctgctaggagac |
41706320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 41648162 - 41648237
Alignment:
| Q |
170 |
atcaatgatgcatggttgatccaactcgagggagaagcacaatttgctgtgacccaaaggtcatttgctaggagac |
245 |
Q |
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| T |
41648162 |
atcaatgatgcatggttgatccaactcgaggaagaagaagaattttccgtgacccaaaggtcttctgctaggagac |
41648237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 41656194 - 41656328
Alignment:
| Q |
113 |
ttcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatgatg--catggttgatccaactcgagggagaagcaca |
210 |
Q |
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| T |
41656194 |
ttcacaatttcctcattcttttcatggtacaccctcaccctttcacaaagcttattgatcaacgatgtatatggttgatgtagctcttgggagaggaaca |
41656293 |
T |
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| Q |
211 |
atttgctgtgacccaaaggtcatttgctaggagac |
245 |
Q |
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| T |
41656294 |
gttcgctgtggccgaaaggtcatttgctaggagac |
41656328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 245
Target Start/End: Complemental strand, 2440948 - 2440781
Alignment:
| Q |
78 |
tttctatccattttggggtgatcgccccaaatggattcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatga |
177 |
Q |
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| T |
2440948 |
tttctatccatttcgcggtgattggcccagatggcttcacaatttcctcattcttttccgggtacaccctcacccattcacaaagcttgttgatcaatga |
2440849 |
T |
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| Q |
178 |
tgcatggttgatccaactcgagggagaagcacaatttgctgtgacccaaaggtcatttgctaggagac |
245 |
Q |
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| T |
2440848 |
tgcatggctaatgtagctcgttggagaagaattgttcgctgtggcccaaaggtcatttactaggagac |
2440781 |
T |
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