View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15676_high_10 (Length: 302)
Name: NF15676_high_10
Description: NF15676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15676_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 52985393 - 52985679
Alignment:
| Q |
1 |
acaacttccatcttcaacatttt-ccctttgtccttcctccttcgtaaacctggagttctctccccatgtgtccttaaactcacttctccctctcctcat |
99 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985393 |
acaactttcatcttcaacatttttccctttgtccttcctccttcgtaaacctagagttctctccccatgtgtccttaaactcacttctccctctcctcat |
52985492 |
T |
|
| Q |
100 |
acttctccactattttannnnnnnncatttctgatttcaacttccacaatcaaaaccaaactctcacagtttcaaaattgggaattaggnnnnnnnaatt |
199 |
Q |
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||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
52985493 |
acttctccactgtttt-ttttttttcatttctgatttcaactttcacaatcaaaaccaaactctcacagtttcaaaatatggaattaggtttttttaatt |
52985591 |
T |
|
| Q |
200 |
tattctttctcacataaacacagattctattgtatctccgccacaccacacttttctacagtattcatcgccacccatttccaccgct |
287 |
Q |
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| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985592 |
tcttctttctcacataaacacaaattctaccgtatctccgccacaccacacttttctacagtattcatcgccacccatttccaccgct |
52985679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 12384579 - 12384750
Alignment:
| Q |
1 |
acaacttccatcttcaacatttt-ccctttgtccttcctccttcgtaaacctggagttctctccccatgtgtccttaaactcacttctccctctcctcat |
99 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |
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| T |
12384579 |
acaacttccatcttcaacatttttccctttgttcttcctccttcataaacctggagtcctcaccccatgtgtccttaaactcacttctccctctcctcct |
12384678 |
T |
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| Q |
100 |
acttctccactattttannnnnnnncatttctgatttcaacttccacaatcaaaa-ccaaactctcacagtttcaaaa |
176 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
12384679 |
acttctccactgtttt------tttcatttctgatttcaacttccacaatcaaaatccaaactctcacaacttcaaaa |
12384750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 14455312 - 14455484
Alignment:
| Q |
1 |
acaacttccatcttcaacatttt-ccctttgtccttcctccttcgtaaacctggagttctctcccc-atgtgtccttaaactcacttctccctctcctca |
98 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |
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| T |
14455312 |
acaacttccatcttcaacatttttccctttgttcttcctccttcataaacctggagtcctcacccccatgtgtccttaaactcacttctccctctcctcc |
14455411 |
T |
|
| Q |
99 |
tacttctccactattttannnnnnnncatttctgatttcaacttccacaatcaaaa-ccaaactctcacagtttcaaaa |
176 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
14455412 |
tacttctccactgtttt------tttcatttctgatttcaacttccacaatcaaaatccaaactctcacaacttcaaaa |
14455484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 18704176 - 18704016
Alignment:
| Q |
1 |
acaacttccatcttcaacatttt-ccctttgtccttcctccttcgtaaacctggagttctctcccc-atgtgtccttaaactcacttctccctctcctca |
98 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |
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| T |
18704176 |
acaacttccatcttcaacatttttccctttgttcttcctccttcataaacctggagtcctcacccccatgtgtccttaaactcacttctccctctcctcc |
18704077 |
T |
|
| Q |
99 |
tacttctccactattttannnnnnnncatttctgatttcaacttccacaatcaaaa-ccaaactctc |
164 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
18704076 |
aacttctccactgtttt------tttcatttctgatttcaacttccacaatcaaaatccaaactctc |
18704016 |
T |
|
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