View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15676_high_2 (Length: 407)
Name: NF15676_high_2
Description: NF15676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15676_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 16014101 - 16013794
Alignment:
| Q |
14 |
acatcatcaaaacgcccagttcctctgaattggcatttctctttgaagaattccttattaccacttcttgatgataaaggaacacagatgaacaggtgat |
113 |
Q |
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| T |
16014101 |
acatcttcaaaacgcccagttcctctgaattggcatttttctttgaagaattccttattaccacttcttgatgataaaggaacacagatgaacaggtgat |
16014002 |
T |
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| Q |
114 |
atctaggatcctgaatttatttatcttgtttagttatttgctacatgtatcctatattagtagaaaccttgtttaattgtaaagagttgtacaattttat |
213 |
Q |
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| T |
16014001 |
atctaggatcctgaatttatttatcttgtttagttatttgctacatgtatcctatattagtagaaaccttgtttaattgtaaagagttgtacgattttat |
16013902 |
T |
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| Q |
214 |
tttttcacttcaaagccatattttctgtcatggatgtatggattttacggatagtctccgactagcgtggatctggctgcactgattttacggatatgtt |
313 |
Q |
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| T |
16013901 |
tttttcacttcaaagccatattttctgtcatggatgtatggattttacggatagtctccgactagcgtggatctggctgcactgattttacggatatgtt |
16013802 |
T |
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| Q |
314 |
gtgtaggg |
321 |
Q |
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| T |
16013801 |
gtgtaggg |
16013794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 16013796 - 16013747
Alignment:
| Q |
339 |
gggaagacaattgtttttattttggtctatcaaagacaagggatgatgtcc |
389 |
Q |
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| T |
16013796 |
gggaagacaattgtttttattttggtctatc-aagacaagggatgatgtcc |
16013747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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