View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15676_high_6 (Length: 340)
Name: NF15676_high_6
Description: NF15676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15676_high_6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 21 - 340
Target Start/End: Original strand, 20670538 - 20670857
Alignment:
| Q |
21 |
acatcatcaactccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcgtaaacaaatgggtaagcatct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20670538 |
acatcatcaactccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcataaacaaatgggtaagcatct |
20670637 |
T |
|
| Q |
121 |
tatcaatctcacatccatcacttagcctaacactcttcatccctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatat |
220 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20670638 |
tatcaatctcccatccatcacttagcctaacactcttcattcctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatat |
20670737 |
T |
|
| Q |
221 |
catccctcaacgtctcgtctacactgacctcctcctcctccctcgttactctcgtatacctactcttctccccggtaaaaccatcaccgttaccgataac |
320 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20670738 |
catccctcaacgtctcgtctacgctgacctcctcctcctccctcgttactctcgtatccctactcttctccccggtaaaaccatcaccgttaccgataac |
20670837 |
T |
|
| Q |
321 |
ttccccggtaatttcaccct |
340 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20670838 |
ttccccggtaatttcaccct |
20670857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University