View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15676_low_1 (Length: 552)
Name: NF15676_low_1
Description: NF15676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15676_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 21 - 548
Target Start/End: Complemental strand, 49350812 - 49350284
Alignment:
| Q |
21 |
ttcggttatgcggtggcgaaaattgacttttaacttaaaaacacatgtggtacacataatgtaaaggagaaaatctttgagcaaagatcagcaagggcat |
120 |
Q |
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| T |
49350812 |
ttcggttatgcggtggcgaaaattgacttttaacttaaaaacacatgtggtacacataatgtaaaggagaaaatctttgagcaaagatcagcaagggcat |
49350713 |
T |
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| Q |
121 |
taaaaagcaccatcagcatcaaaagtggacattttccataaagggaatgaagtgaatatttttgtaacaacactaaaattttttagcactgaagattagt |
220 |
Q |
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| T |
49350712 |
ttaaaagcaccatcagcatcaaaagtggacattttccataaagggaatgaagtgaatatttttgtaacaacactaaaaaaatttagcactgaagattagt |
49350613 |
T |
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| Q |
221 |
taccaaagcaaattcatgaactgtttagggttatatttttatacagagaatgaagtcaagtaaattactctaatataaaattaaacattaatgga-ttgc |
319 |
Q |
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| T |
49350612 |
taccagagcaaattcatgaactgtttagggttatatttttatacagagaatgaagtcaagtaaattactctaatataaaattaaacattaatggagttgc |
49350513 |
T |
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| Q |
320 |
attaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaatgaccatttacaaaatcaacccaacatccttcatgaaccataaaggatg |
419 |
Q |
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| T |
49350512 |
attaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaatgaccatttacaaaatcaacccaacatccttcatgaaccataaaggatg |
49350413 |
T |
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| Q |
420 |
gagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtgtgttttaacctt |
519 |
Q |
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| T |
49350412 |
cagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtgtgttttaacatt |
49350313 |
T |
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| Q |
520 |
ggaggaagtattctacctatgctactcct |
548 |
Q |
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| T |
49350312 |
ggaggaagtattctacctatgctattcct |
49350284 |
T |
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Back To:
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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 507
Target Start/End: Complemental strand, 36663822 - 36663734
Alignment:
| Q |
412 |
aaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtg |
507 |
Q |
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|||||| | |||||||||||||||||||||||| |||| ||||||||| ||| ||| |||| || ||||||||||||||| ||||||||| |
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| T |
36663822 |
aaaggaagcagaagctgaggcacttaaagaacccatgt-------caaagattatatcacaacttcagtcttctttagttcaatcaaatacttgtg |
36663734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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