View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15677_high_2 (Length: 409)

Name: NF15677_high_2
Description: NF15677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15677_high_2
NF15677_high_2
[»] chr3 (2 HSPs)
chr3 (17-397)||(17230234-17230608)
chr3 (36-110)||(28559271-28559345)
[»] chr4 (6 HSPs)
chr4 (153-232)||(19531327-19531405)
chr4 (183-247)||(12139658-12139722)
chr4 (17-119)||(12139795-12139897)
chr4 (37-151)||(18953410-18953530)
chr4 (154-245)||(9021240-9021330)
chr4 (162-239)||(24717083-24717157)
[»] chr1 (5 HSPs)
chr1 (271-334)||(9923088-9923151)
chr1 (280-337)||(1696120-1696177)
chr1 (129-247)||(19881702-19881821)
chr1 (26-99)||(19881854-19881926)
chr1 (349-393)||(19881555-19881599)
[»] chr2 (4 HSPs)
chr2 (122-205)||(28572722-28572807)
chr2 (277-336)||(28572399-28572458)
chr2 (271-333)||(29987828-29987890)
chr2 (276-337)||(30342329-30342390)
[»] chr8 (4 HSPs)
chr8 (180-245)||(12795758-12795823)
chr8 (47-116)||(12796552-12796620)
chr8 (29-104)||(11767199-11767274)
chr8 (282-327)||(11766972-11767017)
[»] chr5 (3 HSPs)
chr5 (277-392)||(24363708-24363823)
chr5 (180-240)||(19434463-19434521)
chr5 (277-392)||(24309504-24309618)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 17230608 - 17230234
Alignment:
Q  17 aatttaatcactgaagcgatgacctcaaagtctccaagatgtctcagcattcatccaggcattgaaagacaaggatttcttcatcaacaatcatatactt 116  Q
    |||||||| ||||||||||||| ||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17230608 aatttaataactgaagcgatgatctctaagtc--caagatgtctcagcattcatccaggcattgaaagacaaggatttcttcatcagcaatcatatactt 17230511  T
Q  117 cattcaaaggatcaagtttgactgaagaaggttacgacactcaagcatactcacgtttatacaaaagtctaacctgttcatatatactactgtaattaca 216  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17230510 catttaaaggaccaagtttaactgaagaaggttacgacactcaagcatactcacatttatacaaaagtctaacctgttcatatatactactgtaattaca 17230411  T
Q  217 tatatacttgtttatattatatactttgtctnnnnnnnnnnnnntaaacatatgtaagagatacactctaagtgtattgagcttcatatatgtttaccac 316  Q
    |||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17230410 tatatacttgtttatattatatactttgtctaaaaaaagaaaaataaacatatgtaagagatacactctaagtgtactgagcttcatatatgtttaccac 17230311  T
Q  317 tccaagagtttatgtaaacaccannnnnnngtaaacaacttcttgttgtatatctctagatttagattaggaagtccccta 397  Q
    ||||||||||    |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17230310 tccaagagtt----taaacaccatctttttataaacaacttcttgttgtatatctctagatttagattaggaagtccccta 17230234  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 28559271 - 28559345
Alignment:
Q  36 tgacctcaaagtctccaagatgtctcagcattcatccaggcattgaaagacaaggatttcttcatcaacaatcat 110  Q
    ||||||| || ||| |||||| ||| ||||||||| |||||||| ||||| |||||||||||| |||||| ||||    
T  28559271 tgacctccaaatcttcaagatatcttagcattcattcaggcattcaaagagaaggatttcttcgtcaacagtcat 28559345  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 19531405 - 19531327
Alignment:
Q  153 acactcaagcatactcacgtttatacaaaagtctaacctgttcatatatactactgtaattacatatatacttgtttata 232  Q
    |||||||||||||| ||||| |||||||| ||||||  ||||||||||||||| |||||||| |||||||||||||||||    
T  19531405 acactcaagcatacccacgtatatacaaa-gtctaaaatgttcatatatactattgtaattatatatatacttgtttata 19531327  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 12139722 - 12139658
Alignment:
Q  183 gtctaacctgttcatatatactactgtaattacatatatacttgtttatattatatactttgtct 247  Q
    ||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||| ||||||    
T  12139722 gtctaacctgttcttatatactattgtaattacatacatacttgtttatattacataccttgtct 12139658  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 12139897 - 12139795
Alignment:
Q  17 aatttaatcactgaagcgatgacctcaaagtctccaagatgtctcagcattcatccaggcattgaaagacaaggatttcttcatcaacaatcatatactt 116  Q
    |||| ||| ||||||||  |||||||||| ||| |||||| ||||| |||||||  ||| |||  ||||||||||||||||||||||| ||||| |||||    
T  12139897 aattgaatgactgaagcattgacctcaaaatcttcaagatatctcaacattcatttaggtattctaagacaaggatttcttcatcaacgatcatctactt 12139798  T
Q  117 cat 119  Q
    |||    
T  12139797 cat 12139795  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 18953530 - 18953410
Alignment:
Q  37 gacctcaaagtctccaagatgtctcagcattcatccaggcattgaaagacaaggatttcttcatcaacaatcatatacttcat-tc-----aaaggatca 130  Q
    |||||| || ||| |||||| ||| | |||||||  ||||||| |||||||||| ||||||||||||| ||||| ||| |||| ||     |||||||||    
T  18953530 gacctccaaatcttcaagatatctgaacattcatttaggcattcaaagacaagggtttcttcatcaacgatcatctacgtcatctctatataaaggatca 18953431  T
Q  131 agtttgactgaagaaggttac 151  Q
    ||||||| |||||||||||||    
T  18953430 agtttgattgaagaaggttac 18953410  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 9021330 - 9021240
Alignment:
Q  154 cactcaagcatactcacgtttatacaaaagtctaacctgttcatatatactactgtaattacatatatacttgtttatattatatactttgt 245  Q
    ||||| ||||||||| | | |||||||| ||||||||||| ||||||||||| | |||||| | | ||||||||||||| | ||||| ||||    
T  9021330 cactctagcatactcgcatatatacaaa-gtctaacctgtccatatatactattataattatacacatacttgtttatagtttatacattgt 9021240  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 24717083 - 24717157
Alignment:
Q  162 catactcacgtttatacaaaagtctaacctgttcatatatactactgtaattacatatatacttgtttatattatata 239  Q
    ||||||||||| ||||||||| |||||| |||||  |||||||| |||||||| ||| ||||||||| ||| ||||||    
T  24717083 catactcacgtatatacaaaa-tctaacatgttc--atatactattgtaattatatacatacttgttcatagtatata 24717157  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 9923151 - 9923088
Alignment:
Q  271 taagagatacactctaagtgtattgagcttcatatatgtttaccactccaagagtttatgtaaa 334  Q
    ||||||||||||| ||||||||||| ||||||||||||||||  ||||  ||||||||||||||    
T  9923151 taagagatacactttaagtgtattgtgcttcatatatgtttattactcttagagtttatgtaaa 9923088  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 1696177 - 1696120
Alignment:
Q  280 cactctaagtgtattgagcttcatatatgtttaccactccaagagtttatgtaaacac 337  Q
    |||| ||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||    
T  1696177 cactttaagtgtattgtgcttcatatctgtttactactcctagagtttatgtaaacac 1696120  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 19881821 - 19881702
Alignment:
Q  129 caagtttgactgaagaaggttacgacact--caagcatactcacgtttatacaaaagtctaacctgttcatatatactactgtaattacatatatacttg 226  Q
    ||||||| | |||||||||||| ||||||  |||||||||||||||  || | ||||| |||  |||||||||| |||| |||||| ||||  ||||||     
T  19881821 caagtttcattgaagaaggttatgacacttacaagcatactcacgtagattc-aaagtttaatatgttcatatacactattgtaatcacatgcatactta 19881723  T
Q  227 tttatattatatactttgtct 247  Q
    |||||| ||||||| ||||||    
T  19881722 tttatagtatataccttgtct 19881702  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 19881926 - 19881854
Alignment:
Q  26 actgaagcgatgacctcaaagtctccaagatgtctcagcattcatccaggcattgaaagacaaggatttcttca 99  Q
    ||||||||||||||||| || ||||||| || ||| | ||||||| ||||||||  |||||||| |||||||||    
T  19881926 actgaagcgatgacctccaa-tctccaaaatatcttaacattcattcaggcattttaagacaagaatttcttca 19881854  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 19881599 - 19881555
Alignment:
Q  349 aaacaacttcttgttgtatatctctagatttagattaggaagtcc 393  Q
    ||||||||| |||||| |||||||| |||| ||||||||||||||    
T  19881599 aaacaacttgttgttgcatatctctggattgagattaggaagtcc 19881555  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 28572807 - 28572722
Alignment:
Q  122 aaaggatcaagtttgactgaagaaggttacgacactcaagcatactcacgtttatac--aaaagtctaacctgttcatatatacta 205  Q
    |||||| ||||||||| |||||||| |||||||||||||||||| ||||||  ||||  | |||| |||| |||||||||||||||    
T  28572807 aaaggaccaagtttgattgaagaagattacgacactcaagcatattcacgtacatacatacaagtataacatgttcatatatacta 28572722  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 28572458 - 28572399
Alignment:
Q  277 atacactctaagtgtattgagcttcatatatgtttaccactccaagagtttatgtaaaca 336  Q
    ||||||||||||||||||| | ||||||||||||||| ||||  ||||||| ||||||||    
T  28572458 atacactctaagtgtattgtgtttcatatatgtttactactcatagagtttgtgtaaaca 28572399  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 29987828 - 29987890
Alignment:
Q  271 taagagatacactctaagtgtattgagcttcatatatgtttaccactccaagagtttatgtaa 333  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||| ||| | ||||| |||||    
T  29987828 taagagatgcactctaagtgtattgtgcttcatatttgtttaccattcctatagtttgtgtaa 29987890  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 30342329 - 30342390
Alignment:
Q  276 gatacactctaagtgtattgagcttcatatatgtttaccactccaagagtttatgtaaacac 337  Q
    |||||||| ||||||||||| ||||||||| ||||||| ||||| ||||| | |||||||||    
T  30342329 gatacactttaagtgtattgtgcttcatatttgtttactactcctagagtctgtgtaaacac 30342390  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 12795823 - 12795758
Alignment:
Q  180 aaagtctaacctgttcatatatactactgtaattacatatatacttgtttatattatatactttgt 245  Q
    |||||||||| |||||||||||||||||||||||| ||  ||||||||| ||| ||||||| ||||    
T  12795823 aaagtctaacatgttcatatatactactgtaattatatgcatacttgttcatagtatataccttgt 12795758  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 12796620 - 12796552
Alignment:
Q  47 tctccaagatgtctcagcattcatccaggcattgaaagacaaggatttcttcatcaacaatcatatactt 116  Q
    |||||||||| ||||| ||||||| || ||||| ||||||||  |||||||||||||||||||| |||||    
T  12796620 tctccaagatatctcaacattcattcaagcattcaaagacaaa-atttcttcatcaacaatcatctactt 12796552  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 11767274 - 11767199
Alignment:
Q  29 gaagcgatgacctcaaagtctccaagatgtctcagcattcatccaggcattgaaagacaaggatttcttcatcaac 104  Q
    |||||| | ||||| || ||| |||||| |||||||||| || |||||||| || ||||| |||||||||||||||    
T  11767274 gaagcgttaacctccaaatcttcaagatatctcagcatttattcaggcatttaatgacaatgatttcttcatcaac 11767199  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 11767017 - 11766972
Alignment:
Q  282 ctctaagtgtattgagcttcatatatgtttaccactccaagagttt 327  Q
    |||||||||||||| |||||||||||| |||| ||||| |||||||    
T  11767017 ctctaagtgtattgtgcttcatatatgattactactcctagagttt 11766972  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 392
Target Start/End: Complemental strand, 24363823 - 24363708
Alignment:
Q  277 atacactctaagtgtattgagcttcatatatgtttaccactccaagagtttatgtaaacaccannnnnnngtaaacaacttcttgttgtatatctctaga 376  Q
    |||||||||| |||||||| ||| ||||||||||||| |||   ||||||| ||||||||| |       ||||||||||| ||||||||||| | | ||    
T  24363823 atacactctatgtgtattgtgctccatatatgtttactactgatagagtttgtgtaaacactatctttttgtaaacaacttgttgttgtatatttgttga 24363724  T
Q  377 tttagattaggaagtc 392  Q
    || ||||||| |||||    
T  24363723 ttaagattagaaagtc 24363708  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 19434463 - 19434521
Alignment:
Q  180 aaagtctaacctgttcatatatactactgtaattacatatatacttgtttatattatatac 240  Q
    |||||||||||||||||||||  ||| ||||||||  || ||||||||||||| |||||||    
T  19434463 aaagtctaacctgttcatata--ctaatgtaattatctacatacttgtttatagtatatac 19434521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 392
Target Start/End: Original strand, 24309504 - 24309618
Alignment:
Q  277 atacactctaagtgtattgagcttcatatatgtttaccactccaagagtttatgtaaacaccannnnnnngtaaacaacttcttgttgtatatctctaga 376  Q
    |||||||||| |||||||| ||| ||||||||||||| |||   ||||||| ||||||||| |       ||||||||||| ||||||||||| | | ||    
T  24309504 atacactctatgtgtattgtgctccatatatgtttactactgatagagtttgtgtaaacacta-tcttttgtaaacaacttgttgttgtatatttgttga 24309602  T
Q  377 tttagattaggaagtc 392  Q
    || ||||||| |||||    
T  24309603 ttaagattagaaagtc 24309618  T

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