View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15677_low_1 (Length: 639)
Name: NF15677_low_1
Description: NF15677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15677_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 16 - 598
Target Start/End: Complemental strand, 51528737 - 51528161
Alignment:
| Q |
16 |
catgaatatggaaacctgcatggcaaagttttgtaaaggtcgtcgtcctgtcttgataagagcctgccgaccagcaaagaaaaatcaaaagaaaacgtgt |
115 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51528737 |
catgaatatggaaacctgcatggccaagttttgtaaaggtcatcgtcctgtcttgataagagcctgccgaccagcaaagaaaaatcaaaagaaaacgtgt |
51528638 |
T |
|
| Q |
116 |
gacacattattgaattattatccaaacttgaatnnnnnnnnnnnnnnnntgttggatgcatggttgaacctgatgaagaaaacatatcatcttgtgagaa |
215 |
Q |
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| T |
51528637 |
gacacattattgaattattatccaaacttgaataaaaaaaa--------tgttggatgcatggttgaacctgatgaagaaaacatatcatcttgtgagaa |
51528546 |
T |
|
| Q |
216 |
tgacactagtgtttgactcatccataatcttgtttgttttgatgattgtttttacaggagtgttatatatatagtgcaaatttttcatagcgaaaacatc |
315 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51528545 |
tgacactagtgtttgactcatccataatcttgttttttttgatgattgtttttacaggagtgttatatatatagtgcgaatttttcatagcgaaaacatc |
51528446 |
T |
|
| Q |
316 |
ccgatcgtgtaaattctttaattgcttgccgttttactctcttaccttggcggaaaacaaggaagattgttgttgctgaatccaacatttctcttgtttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51528445 |
ccgatcgtgtaaattctttaattgcttgccgttttactctcttaccttggcggaaaacaaggaagattgttgttgctgaatccaacatttctcttgtttt |
51528346 |
T |
|
| Q |
416 |
tattcatttctttaaaatctggac--agtgtatttttagaaattttaacatcaaatgcatctctaaaacaaaaggaaccaatacacttagcttagtagtt |
513 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51528345 |
tattcatttctttaaaatctggacagagtgtatttttagaaattttaacatcaaatgcatctctaaaacaaaaggagccaatacacttagcttagtagtt |
51528246 |
T |
|
| Q |
514 |
ggggacaaaacagaatctacgagtatccacatacaataacacaacaaggtcttcctcatcaataattacttacacatgatatagt |
598 |
Q |
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| T |
51528245 |
ggggacaaaacagaatctacgagtatccacatacaataacacaacaaggtcttcctcatcaataattacttaaacttgatatagt |
51528161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 516 - 639
Target Start/End: Original strand, 52232874 - 52232997
Alignment:
| Q |
516 |
ggacaaaacagaatctacgagtatccacatacaataacacaacaaggtcttcctcatcaataattacttacacatgatatagttaatctgctactttatg |
615 |
Q |
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| T |
52232874 |
ggacaaaacagaacctacgagtaaccgcatacaataacacaacaaggtcttcctcatcaataattacttacacatgatatagttaatctgctactttatg |
52232973 |
T |
|
| Q |
616 |
tgcaattctatggacaccatcaca |
639 |
Q |
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|||||||||||||||||||||||| |
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| T |
52232974 |
tgcaattctatggacaccatcaca |
52232997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 52232398 - 52232434
Alignment:
| Q |
457 |
tttaacatcaaatgcatctctaaaacaaaaggaacca |
493 |
Q |
| |
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| T |
52232398 |
tttaacatcaaatacatgtctaaaacaaaaggaacca |
52232434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 264 - 389
Target Start/End: Complemental strand, 15310964 - 15310845
Alignment:
| Q |
264 |
tttttacaggagtgttatatatatagtgcaaatttttcatagcgaaaacatcccgatcgtgtaaattctttaattgcttgccgttttactctcttacctt |
363 |
Q |
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||||||| |||||||||||||| || ||||||| || ||||||| ||| ||| |||||||| |||||||||| || ||| ||||||||||||| |
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| T |
15310964 |
tttttaccggagtgttatatatc----gccaatttttaatcgcgaaaatatctcgagtgtgtaaatgctttaattgca--ccatttgactctcttacctt |
15310871 |
T |
|
| Q |
364 |
ggcggaaaacaaggaagattgttgtt |
389 |
Q |
| |
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||||||| |||||||||||||||| |
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| T |
15310870 |
cacggaaaataaggaagattgttgtt |
15310845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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