View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15677_low_2 (Length: 540)
Name: NF15677_low_2
Description: NF15677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15677_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 12 - 521
Target Start/End: Original strand, 30154035 - 30154544
Alignment:
| Q |
12 |
aagcaaaggttataacttataaggatatggttagcaccaatctcatctaatttggtattgtagcttgagaacaaagaagggagtgatggaacaaagtttt |
111 |
Q |
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| T |
30154035 |
aagcaaaggttataacttataaggatatggttagcaccaatctcatctaatttggtattgtagcttgagaacaaagaagggagtgatggaacaaagtttt |
30154134 |
T |
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| Q |
112 |
gtacataaatggagaagaagagggaacacctaaatgaaatagtagcagcgactctctacatcataggagaataagtgtttattgtagcaaagcaccaatg |
211 |
Q |
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| T |
30154135 |
gcacataaatggaggggaagagggaacacctaaatgaaatagtagcagcgactctctacatcataggagaataagtgtttattgtagcaaagcaccaatg |
30154234 |
T |
|
| Q |
212 |
ttaggtactcaaataacaccgtaacatagaatgtgtaattttcttttgttcaggagaagggagactcaccaagactaaaagaagaacaagaagcacatag |
311 |
Q |
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| T |
30154235 |
ttaggtactcaaataacaccgtaacatagaatgtgtaattttcttttgttcaggagaagggagactctccaagactaaaagaagaacaagaagtacatag |
30154334 |
T |
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| Q |
312 |
actaaaattctattgtgatatttctccctccattcattaaagttccttgccaattttagtatgaatttattcctatattttttaatactatgcctaaaag |
411 |
Q |
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| T |
30154335 |
actaaaattctattgtgatatttctccctccattcattaaagttccttgccaattttagtatgaatttattcctatatttttgaatactatgcctaaaag |
30154434 |
T |
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| Q |
412 |
ctatttatttagaataaataattgtacatcttaacaagagaggtgtaattgaatgaaaaatctaaatgttttattattttttctagatgtctttcatcca |
511 |
Q |
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| T |
30154435 |
ctatttatttagaataaataattgtacatcttaacaagagaggtgtaattgaatgaaaaatctaaatgttttattattttttctagatgtctttcatcca |
30154534 |
T |
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| Q |
512 |
agtgactcat |
521 |
Q |
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| T |
30154535 |
agtgactcat |
30154544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 179 - 521
Target Start/End: Complemental strand, 20818995 - 20818621
Alignment:
| Q |
179 |
agaataagtgtttattgtagcaaagcaccaatgttaggt-----actcaaata---acaccgtaacatagaatgtgtaattttcttttgttcaggagaag |
270 |
Q |
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||||||||||||| ||| ||||||||||||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||||| ||||||| |
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| T |
20818995 |
agaataagtgtttcttggagcaaagcaccaatgttaggttaggtactcaaatagtaataccgtaaaatggaatgtgtaattttcttttgttcgggagaag |
20818896 |
T |
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| Q |
271 |
gg-agactcaccaa------gactaaaagaagaacaagaagcacatagactaaaattctattgtgatatttctccctccattcattaaagttccttgcca |
363 |
Q |
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| T |
20818895 |
gggagactctccaactccaagactaaaagtagaagaagaagtacatattttaga-ttctattgtgatatttctccctccattcattaaagttcattgcca |
20818797 |
T |
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| Q |
364 |
attttagta-tgaatttattcctatattttttaatactatgcc-----------taaaagctatttatttagaataaa----taattgta--catcttaa |
445 |
Q |
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||| ||||| ||||||| ||||||||||||| || ||||||| ||| |||||||||||| ||||||| |||| ||| |||||||| |
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| T |
20818796 |
attgtagtagtgaatttgttcctatatttttggattctatgccaagcctatgcctaagagctatttatttcgaataaaaaaataatggtatacatcttaa |
20818697 |
T |
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| Q |
446 |
caagagaggtgtaattgaatgaaaaatctaaatgttttattattttttctagatgtctttcatccaagtgactcat |
521 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
20818696 |
caagagaagtgtaattgaatgaaaaatctaaacaatttattattttttctagatgtctttcatccaaatgactcat |
20818621 |
T |
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