View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15677_low_4 (Length: 402)
Name: NF15677_low_4
Description: NF15677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15677_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 3040279 - 3040659
Alignment:
| Q |
10 |
gcacagacgaaaccgatccaagacggatctccattttgcattgactgcacattaaaaataacaaacacaaactattatttatctagttcaagccataaac |
109 |
Q |
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| T |
3040279 |
gcacagacgtaaccaatccaagacggatctccattttgcattgactgcacattaaaaatatcaaccgcaaactattatatatctagttcaagccataaac |
3040378 |
T |
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| Q |
110 |
atccttatgtgtcgatttttttctcatcttt---tc----tatcattgtgcttctttgcactcnnnnnnnngtatcttcacatcaatctaatttggtttt |
202 |
Q |
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| T |
3040379 |
atccttatgtgtccatttttttctcatttttctatcatagtatcattgtgcttctttgcactcttatatctgtattttcacatcaatctaatttggtttt |
3040478 |
T |
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| Q |
203 |
ggggagaaatgaacatacatctaagagatggttcagcacaatcggcgcaaccaattgagaaatatcataaccaatctgcaaagatcatcaaaaaattcca |
302 |
Q |
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| T |
3040479 |
ggggagaaatgaacatacatctaagagatggttcagcaaaatcggcgcaaccaattgagaaagatcataaccaatctgcaaagatcatcaaaaaattcca |
3040578 |
T |
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| Q |
303 |
agttccacaagagtcagcacacacttagttcaacaatgttatcgcatgcatgttaatatacaattttttgcatactctaat |
383 |
Q |
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| T |
3040579 |
agttccacaagagtcagcacaaacttagttcaacgatgttatcgcatgccttttaatatacaattttttgcatactctaat |
3040659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 3013448 - 3013781
Alignment:
| Q |
20 |
aaccgatccaagacggatctccattttgcattgactgcacattaaaaataacaaacacaaactattatttatctagttcaagccataaacatccttatgt |
119 |
Q |
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| T |
3013448 |
aaccgatccaagacggatctccattttgcattgactgcacattaaaaacagcagttatacactaaaatatatcaagttcaagccataaacattcttgtgt |
3013547 |
T |
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| Q |
120 |
gtcgatttttttctcatcttttctatcattgt--------gcttctttgcactcnnnnnnnngtatcttcacatcaatctaatttggttttggggagaaa |
211 |
Q |
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| T |
3013548 |
atccatttttttctcatcttttccatcattgtactattgtgcttcttcgcattctttattttgtacgttcgcatcaatccaatttggtttttgagagaaa |
3013647 |
T |
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| Q |
212 |
tgaacatacatctaagagatggttcagcacaatcggcgcaaccaattgagaaatatcataaccaatctgcaaagatcatcaaaaaattccaagttccaca |
311 |
Q |
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| T |
3013648 |
taaacttacatctaagagatgattcagaagaataggcccgacaaattgagaaagatcattaccaatctgcaaagatcgttaaaaatttcaaagttccaca |
3013747 |
T |
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| Q |
312 |
agagtcagcacacacttagttcaacaatgttatc |
345 |
Q |
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| T |
3013748 |
agaatcagaacacacatagttcaacaatgttatc |
3013781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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