View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15678_high_1 (Length: 560)
Name: NF15678_high_1
Description: NF15678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15678_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 560
Target Start/End: Complemental strand, 4532125 - 4531592
Alignment:
| Q |
20 |
ggacattcttgaacatcttaagaaaagaaatgtcaaattcaaaagttagttaaatatagtattagtcttattcagttgatgaagcacgcaacacatagat |
119 |
Q |
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| T |
4532125 |
ggacattcttgaacatcttgagaaaagaaatgtcaaattcaaaagttagttaaatatagtattagtcttattcagttgatgaagcacgcaacacatagat |
4532026 |
T |
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| Q |
120 |
ttgttgaagaaaatagtgatagtgaatttacactaatatatagtactatcattttcagcactccatttctatcctacacgtgtatgtgggactgggaatg |
219 |
Q |
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| T |
4532025 |
ttgttgaagaaaatagtgatagtgaatttacattaatatatagtactatcattttcagcactccatttctatcctacacgtgtatgtagga------atg |
4531932 |
T |
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| Q |
220 |
catcagattgtactaacactattatcaatataatgactactattatcatataaatcttttttaatttgtgaacactgaacaatgatatagaatgtgtttg |
319 |
Q |
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| T |
4531931 |
catcagattgtactaacactattatca-tataatgactactattatcatataaatcttttttaatttgtgaacactgaacaatgatatagaatgtgtttg |
4531833 |
T |
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| Q |
320 |
acataattcctagttcaataactattattaccgtatagaattattttacacaatcaataattttcatctaagtattgcattgtatcgtaatactannnnn |
419 |
Q |
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| T |
4531832 |
acataattcctagttcaataactattattaccatatagaattattttacacaatcaataattttcttctaagtattgcattgtatcgtaatactattttt |
4531733 |
T |
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| Q |
420 |
nnnnnnnnnnnnnnnnnnnctaaataaaaaacaaaagaagacatgagaaaatggcttgacatctcaaataagttggcatccgaagagtacctcatcatct |
519 |
Q |
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| T |
4531732 |
ataattttcttttccttttctaaataaaaaacaaaagaagatatcagaaaatagtttgacattctaaataggttggcatccgaagagtacttcatcatct |
4531633 |
T |
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| Q |
520 |
actaccttactcataaaatattatttttacaatatcagtat |
560 |
Q |
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| T |
4531632 |
accaccttactcaaaaaatattatttttacaatatcagtat |
4531592 |
T |
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