View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15678_high_11 (Length: 217)

Name: NF15678_high_11
Description: NF15678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15678_high_11
NF15678_high_11
[»] chr1 (22 HSPs)
chr1 (1-217)||(47714753-47714969)
chr1 (1-80)||(19495230-19495309)
chr1 (1-80)||(33168094-33168173)
chr1 (1-93)||(4518206-4518298)
chr1 (1-77)||(5141676-5141751)
chr1 (1-105)||(51666444-51666548)
chr1 (1-70)||(25039894-25039963)
chr1 (1-80)||(7966173-7966253)
chr1 (1-93)||(8459148-8459240)
chr1 (1-93)||(46979048-46979140)
chr1 (129-213)||(47722109-47722192)
chr1 (129-213)||(47729101-47729184)
chr1 (1-80)||(36072553-36072632)
chr1 (7-93)||(13177926-13178012)
chr1 (15-93)||(38690114-38690192)
chr1 (1-93)||(94588-94680)
chr1 (1-93)||(46886178-46886270)
chr1 (13-93)||(50113510-50113590)
chr1 (1-80)||(1655893-1655972)
chr1 (13-91)||(12643411-12643489)
chr1 (1-79)||(31780158-31780236)
chr1 (1-93)||(22527485-22527577)
[»] chr6 (16 HSPs)
chr6 (1-105)||(20436075-20436179)
chr6 (1-105)||(20439783-20439887)
chr6 (1-105)||(20448565-20448669)
chr6 (1-99)||(34230670-34230768)
chr6 (1-80)||(8304628-8304707)
chr6 (1-93)||(7537377-7537469)
chr6 (6-105)||(19129173-19129269)
chr6 (1-93)||(2051218-2051310)
chr6 (1-80)||(29667636-29667715)
chr6 (1-63)||(2258476-2258538)
chr6 (1-78)||(18610038-18610115)
chr6 (1-80)||(23959081-23959160)
chr6 (13-93)||(29286405-29286485)
chr6 (20-93)||(3502454-3502527)
chr6 (4-93)||(28362521-28362610)
chr6 (20-80)||(25140909-25140969)
[»] chr5 (9 HSPs)
chr5 (1-105)||(6267665-6267769)
chr5 (1-105)||(43179678-43179782)
chr5 (1-80)||(33994952-33995031)
chr5 (1-93)||(7796768-7796860)
chr5 (1-80)||(24050217-24050296)
chr5 (1-80)||(24053344-24053423)
chr5 (1-102)||(16440197-16440298)
chr5 (1-93)||(38407337-38407429)
chr5 (1-93)||(34122715-34122807)
[»] chr8 (8 HSPs)
chr8 (1-104)||(22661353-22661456)
chr8 (1-105)||(30972652-30972756)
chr8 (1-93)||(4867593-4867685)
chr8 (13-93)||(43679599-43679679)
chr8 (1-80)||(23578625-23578704)
chr8 (20-93)||(34367121-34367194)
chr8 (1-80)||(43377096-43377175)
chr8 (14-91)||(39661-39738)
[»] chr4 (11 HSPs)
chr4 (1-93)||(6186837-6186931)
chr4 (1-93)||(18578813-18578905)
chr4 (1-93)||(44050883-44050975)
chr4 (1-76)||(30043239-30043314)
chr4 (1-93)||(38460616-38460708)
chr4 (19-93)||(51642215-51642289)
chr4 (1-93)||(37395007-37395099)
chr4 (1-80)||(4774417-4774496)
chr4 (1-79)||(10423212-10423289)
chr4 (13-93)||(10374242-10374322)
chr4 (1-93)||(44674328-44674420)
[»] chr7 (7 HSPs)
chr7 (1-93)||(12111406-12111498)
chr7 (1-80)||(10705438-10705517)
chr7 (1-93)||(34742186-34742278)
chr7 (18-93)||(19044500-19044575)
chr7 (18-93)||(20710061-20710136)
chr7 (1-93)||(17838425-17838517)
chr7 (1-93)||(34622689-34622781)
[»] chr3 (9 HSPs)
chr3 (1-93)||(6489519-6489611)
chr3 (20-93)||(21952009-21952082)
chr3 (1-105)||(42166190-42166294)
chr3 (1-93)||(600334-600426)
chr3 (1-80)||(67064-67143)
chr3 (1-93)||(7841286-7841378)
chr3 (1-93)||(36134073-36134165)
chr3 (1-93)||(50213648-50213740)
chr3 (4-93)||(48246605-48246694)
[»] scaffold0219 (1 HSPs)
scaffold0219 (1-93)||(19901-19993)
[»] chr2 (19 HSPs)
chr2 (1-93)||(9659846-9659938)
chr2 (1-93)||(24601830-24601922)
chr2 (1-93)||(24612192-24612284)
chr2 (1-93)||(28342713-28342805)
chr2 (1-93)||(41052812-41052904)
chr2 (1-93)||(43943882-43943974)
chr2 (1-80)||(12905710-12905789)
chr2 (1-80)||(45479624-45479703)
chr2 (1-93)||(25184621-25184713)
chr2 (1-93)||(41181601-41181693)
chr2 (9-103)||(43668320-43668414)
chr2 (12-80)||(3206949-3207017)
chr2 (1-93)||(10825409-10825501)
chr2 (1-93)||(39950961-39951053)
chr2 (18-93)||(82054-82128)
chr2 (1-93)||(439614-439704)
chr2 (1-105)||(25613394-25613497)
chr2 (1-93)||(32952921-32953013)
chr2 (1-93)||(41004717-41004809)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-93)||(12594-12686)
[»] scaffold0011 (1 HSPs)
scaffold0011 (13-93)||(236026-236106)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 47714969 - 47714753
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47714969 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacatttcattaaaattacattaatgt 47714870  T
Q  101 ttgaacacaagtgtgaacatcaattttcccttttttatatgctagaatgttgagttccattaagtatgactcatatatacaaatgtaagtggggcaaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47714869 ttgaacacaagtgtgaacatcaattttcccttttttatatgctagaatgttgagttccattaagtatgactcatatatacaaatgtaagtggggcaaagg 47714770  T
Q  201 gcagggcagctgggcta 217  Q
    |||||||||||||||||    
T  47714769 gcagggcagctgggcta 47714753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19495230 - 19495309
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| ||||||||||||| || ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  19495230 tacaacatttaaactcagtcataaataagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 19495309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 33168094 - 33168173
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    |||||||| | |||||||||||||||||  |||||| ||||||||||| || ||||||||||| |||||| |||||||||    
T  33168094 tacaacatctgtactcagtcataaacaaggaaaatatattatcttttacagttgtccataattaaatcaaaccgacattt 33168173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4518298 - 4518206
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  4518298 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 4518206  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5141751 - 5141676
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgaca 77  Q
    |||||||||||||||||| ||||||||| |||| |||| ||||||||| || ||||||||||| |||||| ||||||    
T  5141751 tacaacatttatactcaggcataaacaagaaaattaca-tatcttttacagttgtccataattaaatcaaaccgaca 5141676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 51666548 - 51666444
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||| ||||| |  ||||||||||| |||||| |||||||||  || ||||||||| || ||    
T  51666548 tacaacattgaaactcggtcataaacaagaaaaatacaatatattttacaattgtccataattaaatcaaaccgacatttggttcaaattacataaaagt 51666449  T
Q  101 ttgaa 105  Q
    |||||    
T  51666448 ttgaa 51666444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25039963 - 25039894
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaa 70  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||| |  ||||||||||| ||||||    
T  25039963 tacaacatttaaactcagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaa 25039894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 7966173 - 7966253
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatc-ttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| ||||||||||||||||  |||||||| |||| ||||| |  ||||||||||| |||||| |||||||||    
T  7966173 tacaacatttaaactcagtcataaacaagtaaaatacaatatctttttacaattgtccataattaaatcaaaccgacattt 7966253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 8459148 - 8459240
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||  ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  8459148 tacaacattgaaacttggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 8459240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 46979140 - 46979048
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||| | ||||||||| |  ||||||||||| |||||| | ||||||| ||| ||||||||    
T  46979140 tacaacattgaaactcggtcataaacaagaaaaatagaatatcttttacaattgtccataattaaatcaaacagacatttgattcaaattaca 46979048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 47722192 - 47722109
Alignment:
Q  129 ccttttttatatgctagaatgttgagttccattaagtatgactcatatatacaaatgtaagtggggcaaagggcagggcagctgg 213  Q
    ||||||||||||| ||||||||||||||||||  |||| |||||||||||| | | ||||| |||| ||| ||||||| ||||||    
T  47722192 ccttttttatatgttagaatgttgagttccatggagtaggactcatatatagacacgtaagagggggaaa-ggcagggtagctgg 47722109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 47729184 - 47729101
Alignment:
Q  129 ccttttttatatgctagaatgttgagttccattaagtatgactcatatatacaaatgtaagtggggcaaagggcagggcagctgg 213  Q
    ||||||||||||| ||||||||||||||||||  |||| |||||||||||| | | ||||| |||| ||| ||||||| ||||||    
T  47729184 ccttttttatatgttagaatgttgagttccatggagtaggactcatatatagacacgtaagagggggaaa-ggcagggtagctgg 47729101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 36072553 - 36072632
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||| ||| ||||||||||||||||  |||||||| ||||||||| |  ||| ||||||| |||||| |||||||||    
T  36072553 tacaacagttaaactcagtcataaacaagtaaaatacaatatcttttacaattgttcataattaaatcaaaccgacattt 36072632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 13178012 - 13177926
Alignment:
Q  7 atttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||| ||||||||||||||||  |||||| | ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  13178012 atttaaactcagtcataaacaagtaaaatataatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 13177926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 38690114 - 38690192
Alignment:
Q  15 tcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||||| || ||||||||| ||||||||| |  |||||||| || |||||| ||||||||| ||| ||||||||    
T  38690114 tcagtcataaataagaaaaatacaatatcttttacaattgtccatagttaaatcaaaccgacatttgattcaaattaca 38690192  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 94588 - 94680
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  94588 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 94680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 46886270 - 46886178
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  |||||||||||    
T  46886270 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttaaaattaca 46886178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 50113510 - 50113590
Alignment:
Q  13 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    |||||| ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  |||||||||||    
T  50113510 actcagacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttaaaattaca 50113590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1655972 - 1655893
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| | | ||||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| | |||||||    
T  1655972 tacaacatttaaatttagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaacggacattt 1655893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 12643411 - 12643489
Alignment:
Q  13 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaatta 91  Q
    |||||| ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  |||||||||    
T  12643411 actcagacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttaaaatta 12643489  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 31780158 - 31780236
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacatt 79  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| ||||||||    
T  31780158 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatt 31780236  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 22527577 - 22527485
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||| ||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  22527577 tacaacattgaaactcggacataaacaagataaatacaatatgttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 22527485  T

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Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 20436179 - 20436075
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    |||| |||||||||| |||||||||||| |  |||||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||| |||||    
T  20436179 tacaccatttatacttagtcataaacaagaggaatacattatcttttacagttgtccatgattaaatcaatccgacattttattaaaattacatgaatgt 20436080  T
Q  101 ttgaa 105  Q
    |||||    
T  20436079 ttgaa 20436075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 20439887 - 20439783
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    |||| |||||||||| |||||||||||| |  |||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||  |||||    
T  20439887 tacaccatttatacttagtcataaacaagaggaatacattatcttttacagttgtccataattaaatcaatccgacattttgttaaaattacaggaatgt 20439788  T
Q  101 ttgaa 105  Q
    |||||    
T  20439787 ttgaa 20439783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 20448669 - 20448565
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    |||| |||||||||| |||||||||||| || |||||||||||||||| || ||||||||||| ||||||||||||||||  ||||||||| |  |||||    
T  20448669 tacaccatttatacttagtcataaacaagaagaatacattatcttttacagttgtccataattaaatcaatccgacatttcgttaaaattagaggaatgt 20448570  T
Q  101 ttgaa 105  Q
    |||||    
T  20448569 ttgaa 20448565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 34230670 - 34230768
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatg 99  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||| |  |||| |||||| |||||| |||||||||  |||||||||||| ||||    
T  34230670 tacaacatttatactcagtcataaagaataaaaatacattatcttttacaattgtctataattaaatcaaaccgacatttcgttaaaattacatgaatg 34230768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8304628 - 8304707
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||| |  ||||||||||| |||||| |||||||||    
T  8304628 tacaacatttgcactcagtcataaacaagaaaaatacattatcttttacaattgtccataattaaatcaaaccgacattt 8304707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 7537377 - 7537469
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  |||||||||||    
T  7537377 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttaaaattaca 7537469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 19129173 - 19129269
Alignment:
Q  6 catttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgtttgaa 105  Q
    ||||||||||||||||||||||| ||   | |||||||||||| || ||||||||||| |||||||| |||||||  || ||||||||  ||||||||||    
T  19129173 catttatactcagtcataaacaagaa---tgcattatcttttacagttgtccataattaaatcaatctgacatttcgttgaaattacacgaatgtttgaa 19129269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 2051218 - 2051310
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | ||||  |||||| ||| ||||||||| ||||||||| || ||||||||||| |||||| |||||||||| || ||||||||    
T  2051218 tacaacattgaaactcgatcataaccaagaaaaatacaatatcttttacagttgtccataattaaatcaaaccgacattttgttcaaattaca 2051310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 29667715 - 29667636
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    |||||| |||| ||||||||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  29667715 tacaacttttaaactcagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 29667636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2258476 - 2258538
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataatt 63  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||||| |  |||||||||||    
T  2258476 tacaacatttaaactcagtcataaacaagaaaaatacaatatcttttacaattgtccataatt 2258538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 18610115 - 18610038
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacat 78  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||    
T  18610115 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacat 18610038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 23959081 - 23959160
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| ||||||||||||||||  |||||||| ||| ||||| |  ||| ||||||| |||||| |||||||||    
T  23959081 tacaacatttaaactcagtcataaacaagtaaaatacaatattttttacaattgttcataattaaatcaaaccgacattt 23959160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 29286405 - 29286485
Alignment:
Q  13 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    |||| ||| ||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  29286405 actcggtcttaaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 29286485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 3502527 - 3502454
Alignment:
Q  20 cataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  3502527 cataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 3502454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 28362610 - 28362521
Alignment:
Q  4 aacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    |||||| | |||| ||||||||||| ||||||||| ||||||||| || |||| | |||| ||| || |||||||||  || ||||||||    
T  28362610 aacattgaaactcggtcataaacaagaaaaatacaatatcttttacagttgtctaaaattaaattaaaccgacatttggttcaaattaca 28362521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 25140969 - 25140909
Alignment:
Q  20 cataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||| ||||||||| |||| |||| |  ||||||||||| |||||| |||||||||    
T  25140969 cataaacaagaaaaatacaatatcatttacaattgtccataattaaatcaaaccgacattt 25140909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6267665 - 6267769
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||  | | ||||||||| |||||||||||||||| ||||||||| ||  |||||    
T  6267665 tacaacatttatcctcagtcataaacaagaaaaatacattatcttttaccgttatccataattaaatcaatccgacatttcattaaaattgcaagaatgt 6267764  T
Q  101 ttgaa 105  Q
    |||||    
T  6267765 ttgaa 6267769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 43179782 - 43179678
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    |||||||||||||||| |||| |||||| ||||||| ||||||||||| |  ||||||||||| |  |||||| ||||||  |||||||||||  |||||    
T  43179782 tacaacatttatactcggtcaaaaacaagaaaaatatattatcttttacacttgtccataattaatacaatccaacatttcgttaaaattacacgaatgt 43179683  T
Q  101 ttgaa 105  Q
    |||||    
T  43179682 ttgaa 43179678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 33995031 - 33994952
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  33995031 tacaacatttaaactcagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 33994952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 7796768 - 7796860
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| || |||||||| ||||||||| |||||||||||  ||||||||||| |||||| |||||||||  || ||||||||    
T  7796768 tacaacattgaaactcggttataaacaagaaaaatacaatatcttttataattgtccataattaaatcaaaccgacatttggttcaaattaca 7796860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 24050217 - 24050296
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| | ||||||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  24050217 tacaacatttaaattcagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 24050296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 24053344 - 24053423
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||| |  |||||||||||  ||||| |||||||||    
T  24053344 tacaacatttaaactcagtcataaacaagtaaaatacaatatcttttacaattgtccataattacatcaaaccgacattt 24053423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 16440298 - 16440197
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    |||| |||||||| |||||||||||||| || ||||||| || ||||| |  || |||||||| ||||||||||| ||||  |||||||||||  |||||    
T  16440298 tacaccatttataatcagtcataaacaagaacaatacataatattttagaattgaccataattaaatcaatccgatatttcgttaaaattacacgaatgt 16440199  T
Q  101 tt 102  Q
    ||    
T  16440198 tt 16440197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 38407337 - 38407429
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||||| ||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| ||| |||||  || ||||||||    
T  38407337 tacaacattgaaactcagacataaacaagaaaaatacaatatcttttagaattgtccataattaaatcaaaccggcatttggttcaaattaca 38407429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34122715 - 34122807
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  || ||||||||    
T  34122715 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttcaaattaca 34122807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22661456 - 22661353
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  | ||||||||||| |||||| |||| ||||  |||||||||||  |||||    
T  22661456 tacaacatttatactcagtcataaacaagaaaaatacattatcttttacggttgtccataattaaatcaaaccgatatttcgttaaaattacacgaatgt 22661357  T
Q  101 ttga 104  Q
    ||||    
T  22661356 ttga 22661353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30972756 - 30972652
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||  | |||| |||||| ||||||| | ||||||  |||||||||||  |||||    
T  30972756 tacatcatttatactcagtcataaacaagaaaaatacattatcttttacggttgtcgataattaaatcaattcaacatttcgttaaaattacacgaatgt 30972657  T
Q  101 ttgaa 105  Q
    |||||    
T  30972656 ttgaa 30972652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4867685 - 4867593
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||| |    ||||||||||| |||||| || |||||| ||| ||| ||||    
T  4867685 tacaacatttaaactcagtcataaacaagaaaaatacaatatctttcaccattgtccataattaaatcaaaccaacatttgatttaaaataca 4867593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 43679599 - 43679679
Alignment:
Q  13 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  43679599 actcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 43679679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 23578625 - 23578704
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||| ||||||| |||||| |||||||||    
T  23578625 tacaacattgaaactctgtcataaacaagaaaaatacaatatcttttacaattgttcataattaaatcaaaccgacattt 23578704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 34367121 - 34367194
Alignment:
Q  20 cataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||| || ||||||||    
T  34367121 cataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacattttgttcaaattaca 34367194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43377175 - 43377096
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| ||| || |||| ||||    
T  43377175 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatgaaaccgaaattt 43377096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 39661 - 39738
Alignment:
Q  14 ctcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaatta 91  Q
    ||||| ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  |||||||||    
T  39661 ctcagacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttaaaatta 39738  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 6186837 - 6186931
Alignment:
Q  1 tacaacatttatactcagtcata--aacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||||||||||  ||| |||||| ||||||||||||||||  |||||||||||    
T  6186837 tacaacatttatactcagtcatataaacaagaaaaatacattatcttttatagtagtcaataattaaatcaatccgacatttcgttaaaattaca 6186931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 18578813 - 18578905
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||||| ||||| ||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| ||||||||| ||| ||| ||||    
T  18578813 tacaacatttaaactcactcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttgattcaaaataca 18578905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 44050975 - 44050883
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  44050975 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 44050883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30043314 - 30043239
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgac 76  Q
    ||||||||||||||| |||||||||||| ||||||  ||||||||||| |  | ||||||||| ||||||||||||    
T  30043314 tacaacatttatactaagtcataaacaagaaaaatgtattatcttttacaattatccataattaaatcaatccgac 30043239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 38460616 - 38460708
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||| | ||||||||| |  ||||||||||| ||| || ||||||||| ||| ||||||||    
T  38460616 tacaacattgaaactcggtcataaacaagaaaaatataatatcttttacaattgtccataattaaattaaaccgacatttgattcaaattaca 38460708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 51642215 - 51642289
Alignment:
Q  19 tcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    |||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  51642215 tcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 51642289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 37395099 - 37395007
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || ||||||||| ||| ||||||||    
T  37395099 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttgattcaaattaca 37395007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 4774496 - 4774417
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| |||||||||||| |||  |||||||| |||| |||| |  ||||||||||| ||||||  ||||||||    
T  4774496 tacaacatttaaactcagtcataagcaagtaaaatacaatatcatttacaattgtccataattaaatcaaatcgacattt 4774417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 10423289 - 10423212
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacatt 79  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| ||| || ||||||||    
T  10423289 tacaacattgaaactcggtcataaacaagaaaaataca-tatcttttacaattgtccataattaaattaaaccgacatt 10423212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 10374242 - 10374322
Alignment:
Q  13 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    |||| ||||||| ||| ||||||||| || |||||| || ||||||||||| ||| || |||||||||  || ||||||||    
T  10374242 actcggtcataaccaagaaaaatacaataccttttacagttgtccataattaaatgaaaccgacatttggttcaaattaca 10374322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 44674328 - 44674420
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| | || |||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  44674328 tacaacattgaaactcggacataaacaagataagtacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 44674420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 12111406 - 12111498
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| |||||||||||  ||||||||||| |||||| |||||||||  || ||||||||    
T  12111406 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttataattgtccataattaaatcaaaccgacatttggttcaaattaca 12111498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 10705438 - 10705517
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  10705438 tacaacatttaaactcagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 10705517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 34742278 - 34742186
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| ||||||||| ||||||||| |  ||||||||||| ||||||  |||||||| ||| ||||||||    
T  34742278 tacaacattgaaactcggacataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaatcgacatttgattcaaattaca 34742186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 19044500 - 19044575
Alignment:
Q  18 gtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||| ||| ||||||||| ||||||||| || ||||||||||| |||||| |||||||||  || ||||||||    
T  19044500 gtcataaccaagaaaaatacaatatcttttacagttgtccataattaaatcaaaccgacatttggttcaaattaca 19044575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 20710136 - 20710061
Alignment:
Q  18 gtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||| ||| ||||||||| ||||||||| || ||||||||||| |||||| |||||||||  || ||||||||    
T  20710136 gtcataaccaagaaaaatacaatatcttttacagttgtccataattaaatcaaaccgacatttggttcaaattaca 20710061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 17838517 - 17838425
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  17838517 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 17838425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34622689 - 34622781
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| |||||||| || ||||||||| ||| ||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  34622689 tacaacattgaaactcggtcataaataagaaaaatacaatatattttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 34622781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 6489519 - 6489611
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||||||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  6489519 tacaacattgaaactcggtcataaacaagaaaaatacattatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 6489611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 21952009 - 21952082
Alignment:
Q  20 cataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| ||||||||| ||||||||||||    
T  21952009 cataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttgattaaaattaca 21952082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 42166294 - 42166190
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || |||||||| ||||||    
T  42166294 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattacactaatgt 42166195  T
Q  101 ttgaa 105  Q
    |||||    
T  42166194 ttgaa 42166190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 600426 - 600334
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  600426 tacaacattgaaactcggacataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 600334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 67064 - 67143
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| ||||| | ||||||||  |||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  67064 tacaacatttaaactcacttataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 67143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 7841286 - 7841378
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||||| ||||||||| | ||||||| ||||||||| |  ||||||||| | ||| || |||||||||  |||||||||||    
T  7841286 tacaacattgaaactcagacataaacaagataaatacagtatcttttacaattgtccataagtaaattaaaccgacatttggttaaaattaca 7841378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 36134165 - 36134073
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  36134165 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 36134073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 50213648 - 50213740
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| |||||| || ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  50213648 tacaacattgaaactcggacataaacaagaaaaatgcaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 50213740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 48246605 - 48246694
Alignment:
Q  4 aacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    |||||| | |||||| ||||| ||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  |||||||||||    
T  48246605 aacattgaaactcagacataagcaatataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttaaaattaca 48246694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 19993 - 19901
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  19993 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 19901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 9659938 - 9659846
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| ||||||  ||||||||  |||||||||||    
T  9659938 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaacgacatttggttaaaattaca 9659846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 24601830 - 24601922
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  24601830 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 24601922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 24612284 - 24612192
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  24612284 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 24612192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28342713 - 28342805
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  28342713 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 28342805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 41052812 - 41052904
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  41052812 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 41052904  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 43943882 - 43943974
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  43943882 tacaacattaaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 43943974  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 12905710 - 12905789
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| ||||||||||||||||  |||||||| ||| ||||| |  ||||||||||| |||||| |||||||||    
T  12905710 tacaacatttaaactcagtcataaacaagtaaaatacaatatattttacaattgtccataattaaatcaaaccgacattt 12905789  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 45479703 - 45479624
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||| |  ||| ||||||| |||||| |||||||||    
T  45479703 tacaacatttaaactcagtcataaacaagtaaaatacaatatcttttacaattgttcataattaaatcaaaccgacattt 45479624  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 25184713 - 25184621
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||| ||||  || ||||||||    
T  25184713 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgatatttggttcaaattaca 25184621  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 41181601 - 41181693
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| |||||||  || ||||||||| ||||||||| || ||||||||||| |||||| |||||||||  || ||||||||    
T  41181601 tacaacattgaaactcggtcataactaagaaaaatacaatatcttttacagttgtccataattaaatcaaaccgacatttggttcaaattaca 41181693  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 43668320 - 43668414
Alignment:
Q  9 ttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgtttg 103  Q
    ||||| |||||||||||||| || ||||||| |||||| | | ||| ||| |||| |||||||| || |||| ||||||||||||  ||||||||    
T  43668320 ttataatcagtcataaacaagaacaatacataatctttcacaactgaccaaaattaaatcaatctgatatttcattaaaattacacaaatgtttg 43668414  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 3206949 - 3207017
Alignment:
Q  12 tactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 80  Q
    |||||| |||||||||| ||| ||||||||||||||| |  |||| |||||| |||||| |||||||||    
T  3206949 tactcaatcataaacaagaaagatacattatcttttacaattgtctataattaaatcaaaccgacattt 3207017  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 10825409 - 10825501
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||||| ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| | |||||||  || ||||||||    
T  10825409 tacaacattgaaactcagacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaacagacatttggttcaaattaca 10825501  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 39951053 - 39950961
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  39951053 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 39950961  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 82128 - 82054
Alignment:
Q  18 gtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||||| ||||||||| ||||||||| |  ||||||| ||| |||||| ||||||||| ||| ||||||||    
T  82128 gtcataaacaagaaaaatacaatatcttttacaattgtccat-attaaatcaaaccgacatttgattcaaattaca 82054  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 439704 - 439614
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| |||  |||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  439704 tacaacattgaaactcggtcataaacaagaaa--tacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 439614  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 25613394 - 25613497
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 100  Q
    |||| |||||| | ||||||||||||||  ||||||||| |||||||| |  || ||| |||| |||||||| | |||||| || ||||||||  |||||    
T  25613394 tacatcatttaaaatcagtcataaacaa-gaaaatacataatcttttacaattgaccaaaattaaatcaatcaggcattttgtttaaattacaagaatgt 25613492  T
Q  101 ttgaa 105  Q
    |||||    
T  25613493 ttgaa 25613497  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 32952921 - 32953013
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||||| ||| ||||| ||||||||| ||| ||||| |  ||||||||||| ||| || |||||||||  || ||||||||    
T  32952921 tacaacattgaaactcagacatcaacaagaaaaatacaatattttttacaattgtccataattaaattaaaccgacatttggttcaaattaca 32953013  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 41004717 - 41004809
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| ||||||||||| ||||||| | ||||||||| |  |||| |||||| |||||| || ||||||  || ||||||||    
T  41004717 tacaacattgaaactcggtcataaacaagaaaaatataatatcttttacaattgtctataattaaatcaaaccaacatttggtttaaattaca 41004809  T

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Target: scaffold0199 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 12594 - 12686
Alignment:
Q  1 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||| || ||||||||    
T  12594 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacattttgtttaaattaca 12686  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 236106 - 236026
Alignment:
Q  13 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 93  Q
    |||||| ||||||||| | ||||||| ||||||||| |  ||||||||||| ||||||  ||||||||  || ||||||||    
T  236106 actcagacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaatcgacatttggttcaaattaca 236026  T

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