View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15678_low_1 (Length: 627)
Name: NF15678_low_1
Description: NF15678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15678_low_1 |
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| [»] scaffold1049 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 550; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 9 - 606
Target Start/End: Complemental strand, 33768072 - 33767476
Alignment:
| Q |
9 |
agcataggaatgttggtaaccaatggaaacaagagcggctgaaagtttggcataccactgtcggcttgcttgtttaaggccatagagagatttgtgaagc |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768072 |
agcagaggaatgttggtaaccaatggaaacaagagcggctgaaagtttggcataccactgtcggcttgcttgtttaaggccatagagagatttgtgaagc |
33767973 |
T |
|
| Q |
109 |
ttacatactttggttgtctctggggaagagttgggaaccataaggccaggcgggagtttcatgtataccacttcatgaaggtctccgtgaagaaaagcat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
33767972 |
ttacatactttggttgtctctggggaagagttgggaaccataaggccgggcgggagtttcatgtataccacttcatgaaggtctccgtggagaaaagcat |
33767873 |
T |
|
| Q |
209 |
tattgacgtcaagttgctcaagaaaccaacctttgctagaagccaagctgagaagagctagtccacaccttccatttgagtgtaacccttggcgacaaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33767872 |
tattgacgtcaagttgctcaagaaaccaacctttactagaagccaagctgagaagagctagtccacaccttccatttgagtgtaacccttggcgacaaga |
33767773 |
T |
|
| Q |
309 |
cgagctttatgacactcaatggtcccatcagcattgaattttaccttataaacccacttgcacccaattggaattttaccctgtggcagcaagagctgtt |
408 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
33767772 |
cgagctttatgacactcaatggtccaatcagcattgaattttaccttataaacccacttgcacccaattggaattttgcccggtggcagcaagagctgtt |
33767673 |
T |
|
| Q |
409 |
aattcagatttcatagcttctatccaacattcagatttacaagcttgggtgtatgtttgtggctcagtggtggaagatatagtaagacaatagtttttat |
508 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33767672 |
aattcaga-ttcatagcttctatccaacattcagatttacaagcttgggtgtatgtttgtggctcagtggtggaagatatagtaagacaatagtttttat |
33767574 |
T |
|
| Q |
509 |
aagggatatcacatttatcataagataaaaaggaagaaatggggtaagcagaattatctgatctgattggtgcagagatgaggttagaagactgcagt |
606 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
33767573 |
aagggatatcacatttatcatacgataaaaaggaagaaatggggtaagcggaattatctgatctgattggtgcagagaagaggttagaagactgcagt |
33767476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 4501521 - 4501477
Alignment:
| Q |
199 |
agaaaagcattattgacgtcaagttgctcaagaaaccaacctttg |
243 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
4501521 |
agaaatgcattattgacatcaagttgctcaagaaaccaccctttg |
4501477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 15825073 - 15825029
Alignment:
| Q |
199 |
agaaaagcattattgacgtcaagttgctcaagaaaccaacctttg |
243 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
15825073 |
agaaatgcattattgacatcaagttgctcaagaaaccaccctttg |
15825029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 34311067 - 34311023
Alignment:
| Q |
199 |
agaaaagcattattgacgtcaagttgctcaagaaaccaacctttg |
243 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
34311067 |
agaaatgcattattgacatcaagttgctcaagaaaccaccctttg |
34311023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 34310804 - 34310739
Alignment:
| Q |
390 |
tgtggcagcaagagctgttaattcagatttcatagcttctatccaacattcagatttacaagcttg |
455 |
Q |
| |
|
|||||| |||||||| ||| |||| ||||||||||||| ||||||||||| | ||||||||||| |
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|
| T |
34310804 |
tgtggctgcaagagcgtgtaactcagctttcatagcttctttccaacattcaaacttacaagcttg |
34310739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 35517954 - 35518204
Alignment:
| Q |
17 |
aatgttggtaaccaatggaaacaagagcggctgaaagtttggcataccactgtcggcttgcttgtttaaggccatagagagatttgtgaagcttacatac |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35517954 |
aatgttggtaaccaatggaaacaagagtggctgaaagtttggcataccaccgtcggcttgcttgtttaaggccataaagagatttgtgaagcttacatac |
35518053 |
T |
|
| Q |
117 |
tttggttgtctctggggaagagttgggaaccataaggccaggcgggagtttcatgtataccacttcatgaaggtctccgtgaagaaaagcattattgacg |
216 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
35518054 |
tttggttgtctctagggaagagttggcaaccataaggccaggcgggagtttcatgtataccttttcatgaaggtctccgtgaagaaaagcattattgacg |
35518153 |
T |
|
| Q |
217 |
tcaagttgctcaagaaaccaacctttgctagaagccaagctgagaagagct |
267 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35518154 |
tcaagttgctcaagaaaccaacctttgatagaagccaagctgagaagagct |
35518204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 392 - 606
Target Start/End: Original strand, 35518401 - 35518610
Alignment:
| Q |
392 |
tggcagcaagagctgttaattcagatttcatagcttctatccaacattcagatttacaagcttgggtgtatgtttgtggctcagtggtggaagatatagt |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
35518401 |
tggcagcaagagctgttaattcagatttcatagcttctatccaacattcagatttacaagcttgggtgtatgtttatggctcagtggtggaagatatagt |
35518500 |
T |
|
| Q |
492 |
aagacaatagtttttataagggatatcacatttatcataagataaaaaggaagaaatggggtaagcagaattatctgatctgattggtgcagagatgagg |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||| |
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|
| T |
35518501 |
aagacaatagtttttataagggatatcacatttatcataagataaaaaggaagaaatggagtaagcagaatt-----acctgattggtgcagagaaaagg |
35518595 |
T |
|
| Q |
592 |
ttagaagactgcagt |
606 |
Q |
| |
|
||||||||||||||| |
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|
| T |
35518596 |
ttagaagactgcagt |
35518610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 267 - 394
Target Start/End: Original strand, 35518247 - 35518374
Alignment:
| Q |
267 |
tagtccacaccttccatttgagtgtaacccttggcgacaagacgagctttatgacactcaatggtcccatcagcattgaattttaccttataaacccact |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35518247 |
tagtccacaccttccatttgagtgtaacccttggcgacaagacgagctttatgacgctcaatggtcccatcaacattgaattttaccttataaacccact |
35518346 |
T |
|
| Q |
367 |
tgcacccaattggaattttaccctgtgg |
394 |
Q |
| |
|
||||||||||||||||||| ||| |||| |
|
|
| T |
35518347 |
tgcacccaattggaattttgcccagtgg |
35518374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 12473146 - 12473254
Alignment:
| Q |
14 |
aggaatgttggtaaccaatggaaacaagagcggctgaaagtttggcataccactgtcggcttgcttgtttaaggccatagagagatttgtgaagcttaca |
113 |
Q |
| |
|
|||||| || |||| ||||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| |
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|
| T |
12473146 |
aggaatatttgtaatcaatggaaacaagagttgttgaaaggttggcataccattgtcggcttgcttgtttaaggcaatagagagatttttgaagcttaca |
12473245 |
T |
|
| Q |
114 |
tactttggt |
122 |
Q |
| |
|
||| ||||| |
|
|
| T |
12473246 |
tacgttggt |
12473254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 8638976 - 8638908
Alignment:
| Q |
54 |
tttggcataccactgtcggcttgcttgtttaaggccatagagagatttgtgaagcttacatactttggt |
122 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| | ||||| | ||||| ||||||||||| |||||||| |
|
|
| T |
8638976 |
tttggaataccactgtctgcttgcttgtttacgaccataaatggatttatgaagcttacacactttggt |
8638908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 26084131 - 26084175
Alignment:
| Q |
199 |
agaaaagcattattgacgtcaagttgctcaagaaaccaacctttg |
243 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
26084131 |
agaaatgcattattgacatcaagttgctcaagaaaccaccctttg |
26084175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 26107918 - 26107962
Alignment:
| Q |
199 |
agaaaagcattattgacgtcaagttgctcaagaaaccaacctttg |
243 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
26107918 |
agaaatgcattattgacatcaagttgctcaagaaaccaccctttg |
26107962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 549720 - 549764
Alignment:
| Q |
199 |
agaaaagcattattgacgtcaagttgctcaagaaaccaacctttg |
243 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
549720 |
agaaatgcattattgacatcaagttgctcaagaaaccaccctttg |
549764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 30280132 - 30280176
Alignment:
| Q |
199 |
agaaaagcattattgacgtcaagttgctcaagaaaccaacctttg |
243 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
30280132 |
agaaatgcattattgacatcaaattgctcaagaaaccaccctttg |
30280176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1049 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold1049
Description:
Target: scaffold1049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 1510 - 1575
Alignment:
| Q |
390 |
tgtggcagcaagagctgttaattcagatttcatagcttctatccaacattcagatttacaagcttg |
455 |
Q |
| |
|
|||||| |||||||| ||| |||| ||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
1510 |
tgtggctgcaagagcatgtaactcagctttcatagcttctttccaacattcaaacttacaagcttg |
1575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1049; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 1247 - 1291
Alignment:
| Q |
199 |
agaaaagcattattgacgtcaagttgctcaagaaaccaacctttg |
243 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
1247 |
agaaatgcattattgacatcaaattgctcaagaaaccaccctttg |
1291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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