View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15678_low_12 (Length: 242)
Name: NF15678_low_12
Description: NF15678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15678_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 5023750 - 5023885
Alignment:
| Q |
89 |
ttctcactaagatgctcctcatataattgattcagaaagggagtacctataaaatcaccccattgttttcttgtctccttaatcaccggagcctcatccg |
188 |
Q |
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| T |
5023750 |
ttctcactaagatgctcctcatataattgatttagaaagggagtacctataaaatcaccccattgttttcttgtctccttaatcactggagtctcatcca |
5023849 |
T |
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| Q |
189 |
cacccagcaactttgtcctcagcaccacgctgtaat |
224 |
Q |
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| T |
5023850 |
cacccagcaactttgtcctcagcaccacgccgtaat |
5023885 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 5019528 - 5019567
Alignment:
| Q |
4 |
gacttgaaagagcaagaaagtcatcacgcaccattgccac |
43 |
Q |
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| T |
5019528 |
gacttgaaagagcaagaaagtcatcacgcaccattgccac |
5019567 |
T |
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