View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15678_low_14 (Length: 227)
Name: NF15678_low_14
Description: NF15678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15678_low_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 46472282 - 46472065
Alignment:
| Q |
7 |
ccttcaacatacatgacatattaataaagataccaaagtacaaacagaaatagaaattgagcaatattgccactacaaagtctcttatacatgaaaggtt |
106 |
Q |
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| T |
46472282 |
ccttcaacatacatgagaaattaataaagataccaaagtacaaacaggaatagaaattgagcaatattgccactacaaagtctcttatacataaaagatt |
46472183 |
T |
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| Q |
107 |
ggtcagcaacgtagctccaataacacagcagcaatgctttacctatttatataacagaaacaaacgcaggggcattgatagaacacataaacattgttca |
206 |
Q |
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| T |
46472182 |
ggtcagcaacgtaggtccaacaacacagcagcactgctttacctatttatataactaaaagaaacgcaggggcatctatagaacacataaacaatggtca |
46472083 |
T |
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| Q |
207 |
taataagatgaagtaaca |
224 |
Q |
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||||||||||||| |||| |
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| T |
46472082 |
taataagatgaagcaaca |
46472065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 3856978 - 3856771
Alignment:
| Q |
7 |
ccttcaacatacatgacatattaataaagataccaaagtacaaacagaaatagaaattgagcaatattgccactacaaagtctcttatacatgaaaggtt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856978 |
ccttcaacatacatgacatattaataaagataccaaagtacaaacagaaatagaaattgagcaatattgccactacaaagtctcttatacatgaa----- |
3856884 |
T |
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| Q |
107 |
ggtcagcaacgtagctccaataacacagcagcaatgctttacctatttatataacagaaacaaacgcaggggcattgatagaacacataaacattgttc- |
205 |
Q |
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| T |
3856883 |
------------agctccaataacacagcaacaatgctttacctaattatataacagaaacaaacgcaggggcatcgatagaacacataaacattgttca |
3856796 |
T |
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| Q |
206 |
---ataataagatgaagtaacagtt |
227 |
Q |
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| T |
3856795 |
taaataataagatgaagtaacagtt |
3856771 |
T |
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