View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15678_low_4 (Length: 530)
Name: NF15678_low_4
Description: NF15678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15678_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 37111914 - 37111413
Alignment:
| Q |
19 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctgactatggccatc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111914 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctgactatggccatc |
37111815 |
T |
|
| Q |
119 |
ttgaccctattgctattgcagctctagtagccataacagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatagccacactcttaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111814 |
ttgaccctattgctattgcagctctagtagccatcacagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatagccacactcttaca |
37111715 |
T |
|
| Q |
219 |
catggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttcacggtatggtcaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111714 |
catggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttcacggtatggtcaat |
37111615 |
T |
|
| Q |
319 |
gcttcagctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctag |
418 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111614 |
gcttccgctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctag |
37111515 |
T |
|
| Q |
419 |
ttggttcaatgacgattacaacaataatctattgcttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttgatgctcctttctc |
518 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111514 |
ttggttcaatgacgattacaacaataatttattgcttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttgatgctcctttctc |
37111415 |
T |
|
| Q |
519 |
tg |
520 |
Q |
| |
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|| |
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|
| T |
37111414 |
tg |
37111413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 37120169 - 37119670
Alignment:
| Q |
19 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctgactatggccatc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
37120169 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaatcctgattatggccatc |
37120070 |
T |
|
| Q |
119 |
ttgaccctattgctattgcagctctagtagccataacagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatagccacactcttaca |
218 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | || || |
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| T |
37120069 |
ttgaccctattgctattggagccctagtagccatcacagctcttgcagtttacagcaccaaaggttcttccatcttcaactacatagccacaatgttcca |
37119970 |
T |
|
| Q |
219 |
catggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttcacggtatggtcaat |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||||| | |
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| T |
37119969 |
catggctgtcattatcttcatagtaatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggttgcatggaatggtcagt |
37119870 |
T |
|
| Q |
319 |
gcttcagctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctag |
418 |
Q |
| |
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|||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||| |
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| T |
37119869 |
tcttcggctgttcttttctttgcttatattggctttgatgctgtttcaaccatggctgaagaaactaaaaaccctggtagagacattcctatcggtctag |
37119770 |
T |
|
| Q |
419 |
ttggttcaatgacgattacaacaataatctattgcttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttgatgctcctttctc |
518 |
Q |
| |
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|||| |||||||||||||||||| ||| ||||||||||| | ||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
37119769 |
ttggatcaatgacgattacaacagcaatatattgcttactaggagcaacactttgtcttatgcagaattacaaagaacttgatactgatgctcctttctc |
37119670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 37136084 - 37136197
Alignment:
| Q |
19 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctgactatggccatc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| | ||||||||||||||||| ||||| |||| |
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| T |
37136084 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatattccacaatatgaaccctgattatggtcatc |
37136183 |
T |
|
| Q |
119 |
ttgaccctattgct |
132 |
Q |
| |
|
|||||||||||||| |
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|
| T |
37136184 |
ttgaccctattgct |
37136197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 325 - 492
Target Start/End: Original strand, 37136390 - 37136557
Alignment:
| Q |
325 |
gctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggtt |
424 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||| || ||||| ||||| || ||||| || |||||||| ||||||||||| |||||||| || || | |
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| T |
37136390 |
gctgttcttttctttgcttacataggctttgatgcagtgtcaactatggccgaggaaactaaaaaccctggcagagacattcctattggtcttgtaggat |
37136489 |
T |
|
| Q |
425 |
caatgacgattacaacaataatctattgcttactggcagcaacactgtgtcttatgcagaattacaaa |
492 |
Q |
| |
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||||| |||| || | || ||||||| ||| ||| ||||||| || ||||||||||| |||||| |
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|
| T |
37136490 |
caatggtaattatcactttcatatattgctcactagcaacaacactatgccttatgcagaactacaaa |
37136557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 441
Target Start/End: Original strand, 10680912 - 10681013
Alignment:
| Q |
340 |
gcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggttcaatgacgattacaa |
439 |
Q |
| |
|
||||||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||| | ||| || || ||||||||| | || |||||||| |||||| |
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| T |
10680912 |
gcttatgttggattcgatgcagtttcgacaatggctgaggaaacgaagaatcctggaaaagatatccctattggtctaataggatcaatgacacttacaa |
10681011 |
T |
|
| Q |
440 |
ca |
441 |
Q |
| |
|
|| |
|
|
| T |
10681012 |
ca |
10681013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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