View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15678_low_6 (Length: 373)

Name: NF15678_low_6
Description: NF15678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15678_low_6
NF15678_low_6
[»] chr3 (14 HSPs)
chr3 (17-367)||(49108970-49109320)
chr3 (66-206)||(35539614-35539753)
chr3 (147-222)||(33831981-33832056)
chr3 (150-222)||(36902367-36902439)
chr3 (66-266)||(46048844-46049048)
chr3 (176-249)||(19900201-19900276)
chr3 (95-258)||(41211954-41212118)
chr3 (30-107)||(52744642-52744721)
chr3 (133-214)||(54422740-54422821)
chr3 (66-193)||(45603395-45603522)
chr3 (185-234)||(3973475-3973525)
chr3 (185-234)||(3996352-3996402)
chr3 (178-215)||(30595153-30595190)
chr3 (161-213)||(13768606-13768658)
[»] chr4 (23 HSPs)
chr4 (66-266)||(2396260-2396462)
chr4 (66-215)||(35331944-35332092)
chr4 (74-255)||(10180582-10180764)
chr4 (66-222)||(39055170-39055325)
chr4 (66-265)||(35144352-35144551)
chr4 (66-222)||(35308945-35309101)
chr4 (150-215)||(2574093-2574158)
chr4 (30-236)||(24030617-24030827)
chr4 (76-222)||(49211035-49211182)
chr4 (73-215)||(12447433-12447575)
chr4 (96-222)||(22628476-22628602)
chr4 (68-205)||(23359127-23359263)
chr4 (163-266)||(8824926-8825030)
chr4 (95-215)||(52199818-52199937)
chr4 (97-213)||(53096599-53096715)
chr4 (95-255)||(25435893-25436054)
chr4 (91-210)||(39629179-39629297)
chr4 (161-248)||(30865871-30865960)
chr4 (66-222)||(23607361-23607517)
chr4 (66-215)||(35382325-35382472)
chr4 (94-135)||(54232693-54232734)
chr4 (91-127)||(35547732-35547768)
chr4 (163-244)||(43968765-43968848)
[»] chr8 (31 HSPs)
chr8 (66-215)||(18806529-18806677)
chr8 (66-215)||(6519004-6519151)
chr8 (66-253)||(13628997-13629186)
chr8 (66-253)||(13729409-13729598)
chr8 (95-215)||(28540686-28540806)
chr8 (142-237)||(9604538-9604635)
chr8 (66-253)||(35973346-35973535)
chr8 (66-215)||(31226430-31226578)
chr8 (97-213)||(23036811-23036927)
chr8 (74-222)||(4797201-4797350)
chr8 (91-215)||(2603058-2603181)
chr8 (77-213)||(3628246-3628380)
chr8 (61-126)||(36317074-36317139)
chr8 (93-215)||(30714036-30714158)
chr8 (93-215)||(30721813-30721935)
chr8 (145-222)||(6427141-6427218)
chr8 (57-210)||(7288242-7288395)
chr8 (163-215)||(5978573-5978625)
chr8 (142-266)||(28567768-28567895)
chr8 (142-266)||(28575361-28575488)
chr8 (149-266)||(38937754-38937873)
chr8 (77-216)||(5139648-5139785)
chr8 (147-243)||(12734028-12734125)
chr8 (133-215)||(23812598-23812681)
chr8 (179-251)||(23982222-23982295)
chr8 (77-215)||(5535765-5535902)
chr8 (133-215)||(9134166-9134247)
chr8 (161-215)||(11777722-11777776)
chr8 (91-144)||(4479616-4479669)
chr8 (95-215)||(31128546-31128665)
chr8 (150-214)||(37673805-37673869)
[»] chr6 (13 HSPs)
chr6 (66-251)||(32658386-32658572)
chr6 (73-255)||(7693890-7694074)
chr6 (187-257)||(9491836-9491908)
chr6 (66-202)||(33755768-33755903)
chr6 (83-222)||(6988184-6988322)
chr6 (81-157)||(1624193-1624269)
chr6 (150-251)||(32977416-32977519)
chr6 (179-255)||(25099050-25099128)
chr6 (161-255)||(387697-387794)
chr6 (148-215)||(18804218-18804285)
chr6 (163-251)||(22281824-22281914)
chr6 (149-215)||(1947018-1947084)
chr6 (150-215)||(5002414-5002479)
[»] chr1 (21 HSPs)
chr1 (74-222)||(42831653-42831801)
chr1 (66-246)||(52353749-52353930)
chr1 (103-253)||(51061618-51061770)
chr1 (147-255)||(38601004-38601112)
chr1 (66-215)||(47783614-47783762)
chr1 (185-266)||(11566958-11567037)
chr1 (150-215)||(44665360-44665425)
chr1 (96-213)||(49003354-49003471)
chr1 (66-264)||(51504493-51504693)
chr1 (150-222)||(11120560-11120632)
chr1 (95-215)||(11449237-11449356)
chr1 (95-215)||(13984053-13984172)
chr1 (161-253)||(11241534-11241628)
chr1 (73-172)||(47364380-47364479)
chr1 (150-245)||(43822759-43822856)
chr1 (177-215)||(36297998-36298036)
chr1 (179-253)||(9505556-9505632)
chr1 (161-222)||(51263198-51263259)
chr1 (163-215)||(25813751-25813803)
chr1 (163-215)||(32851816-32851868)
chr1 (66-126)||(38902067-38902127)
[»] chr7 (24 HSPs)
chr7 (70-215)||(43302083-43302227)
chr7 (77-222)||(48615259-48615404)
chr7 (112-255)||(2008562-2008707)
chr7 (66-266)||(4958199-4958405)
chr7 (161-264)||(48767212-48767318)
chr7 (66-215)||(29914362-29914512)
chr7 (133-215)||(39853784-39853866)
chr7 (149-253)||(32724206-32724315)
chr7 (75-266)||(19987120-19987314)
chr7 (66-217)||(36657849-36657999)
chr7 (147-210)||(46282171-46282234)
chr7 (150-237)||(6068088-6068177)
chr7 (66-212)||(44441609-44441755)
chr7 (66-264)||(47841382-47841582)
chr7 (103-222)||(36901033-36901153)
chr7 (166-222)||(44441347-44441403)
chr7 (131-222)||(23156266-23156356)
chr7 (185-222)||(4874945-4874982)
chr7 (66-139)||(9429729-9429802)
chr7 (185-255)||(38223948-38224020)
chr7 (161-213)||(25307538-25307590)
chr7 (74-118)||(29770788-29770832)
chr7 (95-215)||(31330409-31330529)
chr7 (149-197)||(38360826-38360874)
[»] chr2 (24 HSPs)
chr2 (66-222)||(6710832-6710987)
chr2 (161-266)||(40999639-40999747)
chr2 (74-237)||(34375041-34375203)
chr2 (96-266)||(65383-65554)
chr2 (91-222)||(5038719-5038852)
chr2 (31-210)||(11921964-11922144)
chr2 (133-215)||(44887267-44887349)
chr2 (66-222)||(3668846-3669002)
chr2 (174-255)||(32887670-32887753)
chr2 (163-215)||(36887626-36887678)
chr2 (66-215)||(9583157-9583305)
chr2 (66-210)||(16117872-16118016)
chr2 (150-255)||(34234858-34234964)
chr2 (112-215)||(18970011-18970114)
chr2 (66-204)||(14772886-14773023)
chr2 (66-180)||(15269247-15269360)
chr2 (77-215)||(26312486-26312623)
chr2 (178-215)||(13022796-13022833)
chr2 (66-171)||(28857137-28857242)
chr2 (66-119)||(31050069-31050122)
chr2 (161-222)||(31050160-31050221)
chr2 (166-215)||(39368749-39368798)
chr2 (66-106)||(16534791-16534831)
chr2 (67-107)||(34240621-34240661)
[»] chr5 (15 HSPs)
chr5 (66-266)||(41520822-41521024)
chr5 (93-222)||(2375556-2375684)
chr5 (77-222)||(42551051-42551197)
chr5 (74-222)||(8228774-8228922)
chr5 (147-255)||(15468163-15468273)
chr5 (96-210)||(35463217-35463332)
chr5 (76-206)||(1666743-1666872)
chr5 (66-222)||(29558345-29558500)
chr5 (66-222)||(1309723-1309878)
chr5 (27-171)||(11200453-11200599)
chr5 (91-237)||(4432323-4432469)
chr5 (151-217)||(12593139-12593205)
chr5 (166-215)||(13486599-13486648)
chr5 (66-107)||(31046320-31046361)
chr5 (133-205)||(33133274-33133346)
[»] scaffold0036 (1 HSPs)
scaffold0036 (73-171)||(63609-63707)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 49108970 - 49109320
Alignment:
Q  17 accatttacttcttagagcatctacaacgaagacattca--cttttttacgtaaatgagtctcacgtgtacaaattatttatttataatttttcaacagt 114  Q
    ||||||||||||||||| ||   |||  |||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||| ||||||  |||    
T  49108970 accatttacttcttagaaca---acagtgaagacattcatttttttttacgtaaatgagtctcacgcgtacaaattatttatttataacttttcattagt 49109066  T
Q  115 agtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatt 214  Q
    ||||| ||||||  | | ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49109067 agtacctaataagcactcaatctctcaaaccgagcatctcatacatattttttaaatggaatccactaaccaactatcaataaatttatatcattacatt 49109166  T
Q  215 ttatttttaacatttaaaaagtgtcggtcccacttaaga-ttagggtcttaagaccccgaaaatacttctctcctaatagaatactaatagataccgtgt 313  Q
    |||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  49109167 ttatttttaacatttaaaaagtgttggtctcacttaagatttggggtcttaagaccccgaaaatacttctctcctaataggatactaataggtaccgtgt 49109266  T
Q  314 cttaaaaggttaagactcttccgttgggggtgatcttaagtctctgctcctcct 367  Q
    |||||||||||||||| |||||||||||| |||||||| |||||| || |||||    
T  49109267 cttaaaaggttaagacccttccgttggggatgatcttacgtctctactactcct 49109320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 35539753 - 35539614
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    ||||||||||||||||||||| || ||||||||||||||||| || |||||||| ||||||| | |  ||| ||| |||| || |||||| ||| | |||    
T  35539753 taaatgagtctcacgtgtacacatcatttatttataattttttaatagtagtacctaataaacactcgatcactccaaccaag-atctcacacaaagttc 35539655  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatc 206  Q
    |||||||| | ||| ||| ||||||||||||| ||||||||    
T  35539654 ttaaatgggacccattaatcaactatcaataactttatatc 35539614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 33831981 - 33832056
Alignment:
Q  147 agcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    ||||||||| ||| ||||||| ||||||||||||||| ||||||||||||| || ||||||||||| |||| ||||    
T  33831981 agcatctcacacaaatttctttaatggaatccactaatcaactatcaataatttcatatcattacaatttaatttt 33832056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 36902367 - 36902439
Alignment:
Q  150 atctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    |||||| ||| |||||||||||| ||| |||||| ||||||||||||| |||||||||||| |||||| ||||    
T  36902367 atctcaaacaaatttcttaaatgaaattcactaatcaactatcaataactttatatcattatattttaatttt 36902439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 266
Target Start/End: Complemental strand, 46049048 - 46048844
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttc-aacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacattt 164  Q
    |||||| ||||||| |||| | |||| | |||||||||||||  || | |||||| |||||| |||  |||| ||| |||  ||||||||| ||| | ||    
T  46049048 taaatgggtctcacatgtaaacattactcatttataatttttttaatattagtacctaataagtatccaatccctccaactcagcatctcacacaaagtt 46048949  T
Q  165 cttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagatt-agggtc 261  Q
    |||||||||||  ||| || ||||||||||||| |||||| ||||||||   |  ||||||| |||  ||| || | |||||||||||||||| ||||||    
T  46048948 cttaaatggaactcacaaatcaactatcaataactttataccattacataacaattttttaatattacaaaggtttgggtcccacttaagattgagggtc 46048849  T
Q  262 ttaag 266  Q
    |||||    
T  46048848 ttaag 46048844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 19900201 - 19900276
Alignment:
Q  176 tccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccactt 249  Q
    |||||||| ||||||| ||||| |||||||||||||||||||  ||||||| ||| ||||||||| | ||||||||    
T  19900201 tccactaatcaactataaataattttatatcattacattttaattttttaatattaaaaaagtgtagatcccactt 19900276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 258
Target Start/End: Complemental strand, 41212118 - 41211954
Alignment:
Q  95 atttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaa 194  Q
    ||||||||||||  || |||||||| ||||||  | | |||| ||| || | | |||||||||||  |||||||||||  |   ||||| ||||||||||    
T  41212118 atttataattttgtaatagtagtacctaataagcagtaaatccctccaatcgaacatctcatacaagtttcttaaatgagacatactaatcaactatcaa 41212019  T
Q  195 taaatttatatcattacatttt-atttttaacatttaaaaagtgtcggtcccacttaagattagg 258  Q
    ||| |||||||||||||||||| |||||||| ||| |||| |||   ||| |||||||| |||||    
T  41212018 taactttatatcattacattttaatttttaatattaaaaaggtgcgagtcacacttaaggttagg 41211954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 52744642 - 52744721
Alignment:
Q  30 tagagcatctacaacgaagacattcacttttt--tacgtaaatgagtctcacgtgtacaaattatttatttataattttt 107  Q
    |||| |||| |||| | ||||||||| |||||  ||| ||||||||||||||||||||| |||| |||||||||||||||    
T  52744642 tagaacatccacaatggagacattcattttttactacttaaatgagtctcacgtgtacacattacttatttataattttt 52744721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 54422821 - 54422740
Alignment:
Q  133 aatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatt 214  Q
    |||||||| ||||||| |||| |  || ||||||||||||  | ||||||| ||| ||||||||| ||||||||||||||||    
T  54422821 aatctctccaacctagtatctaacgcaaatttcttaaatgagacccactaatcaattatcaataattttatatcattacatt 54422740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 45603395 - 45603522
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||||||||||||| |||| || ||| ||||||||||||  || | |||||||||||||| | | |||| || ||| | | ||||||| ||| ||||     
T  45603395 taaatgagtctcacgtatacacatcattcatttataattttataataatagtacttaataaacactcaatcccttaaatccaacatctcacacaaatttt 45603494  T
Q  166 ttaaatggaatccactaaccaactatca 193  Q
    |||||||  | ||||||| ||| |||||    
T  45603495 ttaaatgtgacccactaatcaaatatca 45603522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 3973475 - 3973525
Alignment:
Q  185 caactatcaataaatttatatcattacatttt-atttttaacatttaaaaa 234  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||| |||||    
T  3973475 caaccatcaataaatttatatcattacattttaatttttaatattaaaaaa 3973525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 3996402 - 3996352
Alignment:
Q  185 caactatcaataaatttatatcattacatttt-atttttaacatttaaaaa 234  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||| |||||    
T  3996402 caaccatcaataaatttatatcattacattttaatttttaatattaaaaaa 3996352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 30595153 - 30595190
Alignment:
Q  178 cactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  30595153 cactaatcaactatcaataattttatatcattacattt 30595190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 13768606 - 13768658
Alignment:
Q  161 atttcttaaatggaatccactaaccaactatcaataaatttatatcattacat 213  Q
    ||||||||||||| | |||| || ||||||||||||| ||||||||| |||||    
T  13768606 atttcttaaatgggacccacaaatcaactatcaataactttatatcagtacat 13768658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 66 - 266
Target Start/End: Complemental strand, 2396462 - 2396260
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||||||| |||||||||| || | ||||||||||||| | || |||||||| ||||||  | | |||| |||||||  ||||||||| | | |||||    
T  2396462 taaatgagtcccacgtgtacacatcacttatttataatttgttaatagtagtacctaataagaactcaatcgctcaaactcagcatctcacaaaaatttc 2396363  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagattagggtctt 263  Q
    |||||||||| ||||||| ||||||||||||| ||||||||| ||||||| |  ||||||| ||| ||||| ||  |||||| ||||| | | |||||||    
T  2396362 ttaaatggaacccactaatcaactatcaataactttatatcagtacatttcaagtttttaatattaaaaaattgagggtccctcttaaaagtggggtctt 2396263  T
Q  264 aag 266  Q
    |||    
T  2396262 aag 2396260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 35331944 - 35332092
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||||||| ||||| |||| |||| ||||||||| ||||| || |||||||| ||||||  | | |||| ||| |||| || |||||| ||| | |||    
T  35331944 taaatgagtcccacgtatacacattacttatttatacttttttaatagtagtacataataagcactcaatcactccaacccag-atctcacacaaagttc 35332042  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||| ||||    
T  35332043 ttaaatgggatccactaatcaactatcaataactttatatcattatattt 35332092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 255
Target Start/End: Original strand, 10180582 - 10180764
Alignment:
Q  74 tctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatgg 173  Q
    ||||||||||||| || | | ||||||||||||| || |||||||| ||||||  | | |||  ||| |||||||||||| | ||| ||||||||||||     
T  10180582 tctcacgtgtacatatcactcatttataattttttaatagtagtacctaataagaactcaatgcctccaacctagcatcttacacaaatttcttaaatga 10180681  T
Q  174 aatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagatt 255  Q
     |||||| || ||||||||||||| ||||||||||||||| | |  ||||||| ||| |||| || | ||||||||||||||||    
T  10180682 gatccac-aatcaactatcaataactttatatcattacatatcaattttttaatattaaaaaggtatgggtcccacttaagatt 10180764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 39055325 - 39055170
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||||||| ||||| || | | ||||||||||||| || | |||||| |||||| |||| |||| ||| |||  || |||||| ||| | |||    
T  39055325 taaatgggtctcacgcgtacacatcactcatttataattttttaatattagtacctaataagtattaaatccctccaactcag-atctcacacaaagttc 39055227  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    ||||||| || ||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  39055226 ttaaatgaaacccactaatcaactatcaataactttatatcattacattttaatttt 39055170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 265
Target Start/End: Complemental strand, 35144551 - 35144352
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||||||||||||| || | ||||||||||||||| |  |||||||  ||||||  ||| |||| ||| |||| || |||||||||| |||||    
T  35144551 taaatgggtctcacgtgtacatatcaattatttataattttttagtagtagtatctaataagcattcaatccctccaacccag-atctcatacaaatttc 35144453  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagattagggtctt 263  Q
    |||||| ||||||||| |  ||| || ||||| |||||| |||||||||| |  ||||||| | ||||||  ||| |||||||||||| ||| |||||||    
T  35144452 ttaaatagaatccactgataaaccattaataattttataccattacatttcaattttttaata-ttaaaatatgtgggtcccacttaaaattggggtctt 35144354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 35308945 - 35309101
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    ||||||||||||||| |||||  | | ||||||||||||||| || |||| ||  |||||| || | |||| ||| | ||||||| |||| |||  |||     
T  35308945 taaatgagtctcacgcgtacacgtcacttatttataattttttaatagtaatatctaataagtactcaatccctctagcctagcaactcacacaattttt 35309044  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    |||||||| |  |||||| ||||||||||||| |||||||||||| |||||| ||||    
T  35309045 ttaaatgggactcactaatcaactatcaataactttatatcattatattttaatttt 35309101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 2574093 - 2574158
Alignment:
Q  150 atctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||||| ||||||||||| |||| |||||| ||||||| ||||| |||||||||||||||||    
T  2574093 atctcatacaaatttcttaaatagaattcactaatcaactattaataactttatatcattacattt 2574158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 24030827 - 24030617
Alignment:
Q  30 tagagcatctacaacgaagacattcactttttta--cgtaaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaa 127  Q
    ||||||||| | || | ||||||||| |||||||  | ||||||||  ||||||||||| || | || |||||||||||| || |||| |||  ||||||    
T  24030827 tagagcatcaataatggagacattcaattttttagtcttaaatgagcatcacgtgtacatatcacttgtttataattttttaaaagtaatacccaataaa 24030728  T
Q  128 tatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaac 225  Q
     | ||||||  |||||| ||  |||||| ||| || | || |||||| || ||||| ||||||||||||| |||| || |||||||||||  |||||||     
T  24030727 aacttaatccatcaaacttaatatctcacacaaatattttgaatggattctactaatcaactatcaataactttacattattacattttaattttttaat 24030628  T
Q  226 atttaaaaagt 236  Q
    ||| |||||||    
T  24030627 attaaaaaagt 24030617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 49211182 - 49211035
Alignment:
Q  76 tcacgtgtacaaattatttatttataatttttc-aacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatgga 174  Q
    ||||||||||| || |||||||||||||||||  || |||||||  ||||||  | |  ||| ||| |||||||||||||| | | ||| ||||||||      
T  49211182 tcacgtgtacatatcatttatttataatttttttaatagtagtatctaataagaactctatccctccaacctagcatctcacaaaaattccttaaatgag 49211083  T
Q  175 atccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    | ||| ||| ||| ||||||||| ||||||||||||||||||| ||||    
T  49211082 acccattaatcaattatcaataactttatatcattacattttaatttt 49211035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 12447575 - 12447433
Alignment:
Q  73 gtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatg 172  Q
    |||||||| |||||||| | ||||||||||||||| || ||||||   ||||||  | | ||||  |  |||| ||||||||| | | |||||||||||     
T  12447575 gtctcacgagtacaaatcacttatttataattttttaatagtagtctataataagaactcaatccttttaacccagcatctcacaaaaatttcttaaata 12447476  T
Q  173 gaatccactaaccaactatcaataaatttatatcattacattt 215  Q
      | ||||||| ||||||||||||| |||||||||||||||||    
T  12447475 agacccactaatcaactatcaataactttatatcattacattt 12447433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 22628602 - 22628476
Alignment:
Q  96 tttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaat 195  Q
    |||||||||||| || || ||||| ||||||| | | ||||||||  ||| |  ||| || ||| |||| |||||||| |  |||||| |||||||||||    
T  22628602 tttataattttttaataggagtacataataaacactcaatctctctgacccaatatcacacacaaattttttaaatgggactcactaatcaactatcaat 22628503  T
Q  196 aaatttatatcattacattttattttt 222  Q
    || ||||||||||||||||||| ||||    
T  22628502 aactttatatcattacattttaatttt 22628476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 23359263 - 23359127
Alignment:
Q  68 aatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttctt 167  Q
    |||||||||||| | |||| || ||| ||||||||||||| || |||||||  ||||||  | | |||| ||| ||||||| |||||| ||| | |||||    
T  23359263 aatgagtctcacatatacacatcattcatttataattttttaatagtagtatctaataagcactcaatcactccaacctag-atctcacacaaagttctt 23359165  T
Q  168 aaatggaatccactaaccaactatcaataaatttatat 205  Q
    |||||  |||||| || ||||||||||||| |||||||    
T  23359164 aaatgagatccacaaatcaactatcaataactttatat 23359127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 8825030 - 8824926
Alignment:
Q  163 ttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt-tatttttaacatttaaaaagtgtcggtcccacttaagattagggtc 261  Q
    ||||||||||||| | ||||| ||||||||||||| |||||||||||| ||||  |||||||| ||| ||| |||||  ||||| ||||| | | |||||    
T  8825030 ttcttaaatggaacctactaatcaactatcaataactttatatcattatatttcaatttttaatattaaaagagtgtgcgtcccgcttaaaagtggggtc 8824931  T
Q  262 ttaag 266  Q
    |||||    
T  8824930 ttaag 8824926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 52199937 - 52199818
Alignment:
Q  95 atttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaa 194  Q
    ||||||||||||| || |||||||| ||||||  ||| |||| ||| |||| || |||||| ||| | ||||||||||| | ||||||| | ||||||||    
T  52199937 atttataattttttaatagtagtacctaataagcattcaatcactccaacccag-atctcacacaaagttcttaaatgggacccactaatccactatcaa 52199839  T
Q  195 taaatttatatcattacattt 215  Q
    ||| | |||||||||| ||||    
T  52199838 taattatatatcattatattt 52199818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 53096599 - 53096715
Alignment:
Q  97 ttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaata 196  Q
    ||||||||||| || |||| ||||||||||  | | |||| ||  |||| | ||||||| ||| ||||||||||||| | | ||||| ||||||||||||    
T  53096599 ttataattttttaatagtaatacttaataagaactcaatccctttaacccaacatctcacacaaatttcttaaatgggaccaactaatcaactatcaata 53096698  T
Q  197 aatttatatcattacat 213  Q
    | ||||||| |||||||    
T  53096699 actttatattattacat 53096715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 255
Target Start/End: Original strand, 25435893 - 25436054
Alignment:
Q  95 atttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaa 194  Q
    ||||||||||| | || | ||||| ||||||| |||| |||||||  |||| | ||||||| ||| |||| |||||||| ||| ||||| | | ||||||    
T  25435893 atttataatttattaataatagtatttaataagtattcaatctcttcaacccaacatctcacaca-attttttaaatgggatcgactaatccattatcaa 25435991  T
Q  195 taaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagatt 255  Q
    ||| |||||| |||||||||| |  ||| ||| |||||||||||||  |||  ||||||||||    
T  25435992 taactttatagcattacatttcaattttataatatttaaaaagtgtgtgtcaaacttaagatt 25436054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 39629179 - 39629297
Alignment:
Q  91 atttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaacta 190  Q
    ||||||||||||||||| || |||||||  ||||||  | | |||| ||| |||| || ||| || ||| | ||||||||||  ||||||||| ||||||    
T  39629179 atttatttataattttttaatagtagtatctaataagcactaaatcactccaacccag-atcacacacaaagttcttaaatgagatccactaaacaacta 39629277  T
Q  191 tcaataaatttatatcatta 210  Q
    ||||||| ||||||||||||    
T  39629278 tcaataattttatatcatta 39629297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 30865960 - 30865871
Alignment:
Q  161 atttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccact 248  Q
    ||||||||||||  |  |||||| ||||||||||||| ||||||||||||||||| |  ||||||| ||| ||||||||| ||| |||||    
T  30865960 atttcttaaatgagactcactaatcaactatcaataactttatatcattacatttcaattttttaatattaaaaaagtgtaggttccact 30865871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 23607517 - 23607361
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctca-tacacattt 164  Q
    |||||| ||||||||| |||| |||| ||||||||||||||| || |||||||  || |||  | | |||||||| || | |||||||||  ||| | ||    
T  23607517 taaatgggtctcacgtatacacattacttatttataattttttaatagtagtatctattaagaactcaatctctctaatccagcatctcacaacaaaatt 23607418  T
Q  165 cttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
     | |||||| ||||||||| || ||||||||||  || |||| |||||||||| ||||    
T  23607417 -taaaatgggatccactaatcagctatcaataacattttatctttacattttaatttt 23607361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 35382325 - 35382472
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| ||||| ||||||||  | ||| ||||||||||||| || |||||||| ||||||  ||| |||| ||| |||| || || ||| ||| | |||    
T  35382325 taaatgggtctc-cgtgtacacctcattcatttataattttttaatagtagtacataataagcattcaatcactccaacccag-atttcacacaaagttc 35382422  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||  |  |||||| ||||||||| ||| |||||||||||| ||||    
T  35382423 ttaaatgagacacactaatcaactatcactaactttatatcattatattt 35382472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 54232693 - 54232734
Alignment:
Q  94 tatttataatttttcaacagtagtacttaataaatatttaat 135  Q
    ||||||||||||||||| | ||||| ||||||||||||||||    
T  54232693 tatttataatttttcaatattagtatttaataaatatttaat 54232734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 35547732 - 35547768
Alignment:
Q  91 atttatttataatttttcaacagtagtacttaataaa 127  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  35547732 atttatttataattttttaacagtagtatttaataaa 35547768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 43968848 - 43968765
Alignment:
Q  163 ttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcc 244  Q
    ||||||||| | | ||||||| ||||||||||||| ||||||||| || ||||||  ||||||| ||| ||| ||||| |||||    
T  43968848 ttcttaaataggacccactaatcaactatcaataactttatatcactatattttaattttttaatattaaaagagtgtgggtcc 43968765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 18806529 - 18806677
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| || ||||||||||| || | ||||||||||||||| || |||||||  ||||||| |||  ||| ||||||||||| |||||| ||| ||||     
T  18806529 taaatgggtttcacgtgtacacatcacttatttataattttttaatagtagtatctaataaacattcgatcactcaaacctag-atctcacacaaatttt 18806627  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||| ||||    
T  18806628 ttaaatgggatccactaatcaactatcaataactttatatcattatattt 18806677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 6519004 - 6519151
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| ||| |||||| ||| || | ||||||||||||||| || |||||||| ||||||  ||| |||||||| |||| ||||||||  ||| |||||    
T  6519004 taaatgggtcccacgtgcacatatcacttatttataattttttaatagtagtacctaataagaattcaatctctccaacccagcatctc--acaaatttc 6519101  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||  |  |||||| ||||||||||||| |||||||||||||||||    
T  6519102 ttaaatgagactcactaatcaactatcaataactttatatcattacattt 6519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 13628997 - 13629186
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| ||||||| |||||| || ||| ||||||||||||| || |||||||  |||||| || | |||| ||| |||| | ||||||||||| | |||    
T  13628997 taaatgggtctcacatgtacacatcattcatttataattttttaatagtagtatctaataagtagtcaatccctccaacccaacatctcatacaaaattc 13629096  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaaga 253  Q
    |||||| | |||||  || ||||||||||||| |||||| |||||||| | |  ||||||| ||| |||| |||| || |||||||||||    
T  13629097 ttaaataggatccagaaatcaactatcaataactttataccattacatatcaattttttaatattaaaaatgtgtgggacccacttaaga 13629186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 13729409 - 13729598
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| ||||||| |||||| || ||| ||||||||||||| || |||||||  |||||| || | |||| ||| |||| | ||||||||||| | |||    
T  13729409 taaatgggtctcacatgtacacatcattcatttataattttttaatagtagtatctaataagtagtcaatccctccaacccaacatctcatacaaaattc 13729508  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaaga 253  Q
    |||||| | |||||  || ||||||||||||| |||||| |||||||| | |  ||||||| ||| |||| |||| || |||||||||||    
T  13729509 ttaaataggatccagaaatcaactatcaataactttataccattacatatcaattttttaatattaaaaatgtgtgggacccacttaaga 13729598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 28540806 - 28540686
Alignment:
Q  95 atttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaa 194  Q
    ||||||||||||| || ||||||||||||||| |||| |||  ||| |||| ||||||||| ||| |||||||||| |  |  |||||| ||||||||||    
T  28540806 atttataattttttaatagtagtacttaataagtattcaattactccaacccagcatctcacacaaatttcttaaaagagactcactaatcaactatcaa 28540707  T
Q  195 taaatttatatcattacattt 215  Q
    ||  |||||||||||||||||    
T  28540706 tagttttatatcattacattt 28540686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 9604538 - 9604635
Alignment:
Q  142 aacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtg 237  Q
    |||| ||||||||||| | ||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||| |  ||||||||||| ||| ||||    
T  9604538 aacccagcatctcataaaaatttcttaaatggaacccactaatcaactatcaataactttatatcattagatttcaattttttaacattaaaagagtg 9604635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 35973346 - 35973535
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    ||||| ||| ||| ||||||| |||| ||||||||||||||| || ||| |||| ||||||| | ||||||  || |||  |  |||||| |||||||||    
T  35973346 taaataagtttcatgtgtacagattacttatttataattttttaatagttgtacctaataaacacttaatccatccaactcaatatctcacacacatttc 35973445  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaaga 253  Q
    |||||||  ||| ||||| ||| |||||||||  ||||||||||| || | |  ||||||| ||| ||||||||| |||||||| |||||    
T  35973446 ttaaatgagatctactaatcaattatcaataacattatatcattatatatcaattttttaatattaaaaaagtgtaggtcccacctaaga 35973535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 31226430 - 31226578
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| || |||| |||||| || | | ||||||||||||| || |||||||| ||||||||| | || | ||| ||||||| |||||| ||| | |||    
T  31226430 taaatgggtgtcacatgtacacatcactcatttataattttttaatagtagtacctaataaatactcaaacactccaacctag-atctcacacaaagttc 31226528  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||| | ||||||  ||||||||||||| |||||||||||| ||||    
T  31226529 ttaaatgggacccactactcaactatcaataattttatatcattatattt 31226578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 23036927 - 23036811
Alignment:
Q  97 ttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaata 196  Q
    |||||||||||||| |||||||  ||||||  | | |||||||  |||| ||||||||| ||| |||||||||  | |||||||| | ||||||||||||    
T  23036927 ttataatttttcaatagtagtatctaataagaactcaatctcttcaacccagcatctcacacaaatttcttaatagaaatccactgatcaactatcaata 23036828  T
Q  197 aatttatatcattacat 213  Q
    | |||||||||||||||    
T  23036827 attttatatcattacat 23036811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 4797201 - 4797350
Alignment:
Q  74 tctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatgg 173  Q
    ||||||||||||  || | | ||||||||||||| || ||||| | ||||||||||| ||||| ||| |||  ||||||||| ||| ||||||||||||     
T  4797201 tctcacgtgtacgtatcactaatttataattttttaatagtagcatttaataaatatctaatccctccaactcagcatctcacacaaatttcttaaatgt 4797300  T
Q  174 aatccactaaccaactatcaataaattt-atatcattacattttattttt 222  Q
     |  || ||| ||||||||||||| ||| ||||||| |||||||| ||||    
T  4797301 gactcattaatcaactatcaataactttaatatcatcacattttaatttt 4797350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 2603058 - 2603181
Alignment:
Q  91 atttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaacta 190  Q
    ||||||||||||||||| || |||||||  |||||| || | |||| ||| || | || |||||| ||| | ||||||||||  ||||||||| ||||||    
T  2603058 atttatttataattttttaatagtagtatctaataagtactcaatccctccaatccag-atctcacacaaagttcttaaatgagatccactaatcaacta 2603156  T
Q  191 tcaataaatttatatcattacattt 215  Q
    ||||||| ||||||||| |||||||    
T  2603157 tcaataactttatatcactacattt 2603181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 3628380 - 3628246
Alignment:
Q  77 cacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaat 176  Q
    |||||||||| || ||||||||||||||||| || |||||| ||||||||  | | |||  ||| |||  || |||||  ||| |||||||||||| |||    
T  3628380 cacgtgtacatatcatttatttataattttttaatagtagtgcttaataagcactaaattcctccaactcagtatctc--acaaatttcttaaatgaaat 3628283  T
Q  177 ccactaaccaactatcaataaatttatatcattacat 213  Q
     || ||| |||||| |||||| |||||||||||||||    
T  3628282 tcattaatcaactagcaataactttatatcattacat 3628246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 36317139 - 36317074
Alignment:
Q  61 ttacgtaaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataa 126  Q
    |||| ||||||||||||||||||||| || |||||||||||||| |||||  ||||||| ||||||    
T  36317139 ttacttaaatgagtctcacgtgtacacatcatttatttataattattcaatcgtagtacctaataa 36317074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 30714036 - 30714158
Alignment:
Q  93 ttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatc 192  Q
    ||||||||||| ||| || |||||||| ||||||  | ||||| | || || | | ||||||| ||| ||||  ||||||| |  |||||| ||||||||    
T  30714036 ttatttataatattttaatagtagtacataataagcacttaatatttccaatccaacatctcacacaaattttgtaaatgggactcactaatcaactatc 30714135  T
Q  193 aataaatttatatcattacattt 215  Q
    ||||| |||||||||||||||||    
T  30714136 aataactttatatcattacattt 30714158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 30721813 - 30721935
Alignment:
Q  93 ttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatc 192  Q
    ||||||||||| ||| || |||||||| ||||||  | ||||| | || || | | ||||||| ||| ||||  ||||||| |  |||||| ||||||||    
T  30721813 ttatttataatattttaatagtagtacataataagcacttaatatttccaatccaacatctcacacaaattttgtaaatgggactcactaatcaactatc 30721912  T
Q  193 aataaatttatatcattacattt 215  Q
    ||||| |||||||||||||||||    
T  30721913 aataactttatatcattacattt 30721935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 6427141 - 6427218
Alignment:
Q  145 ctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    ||||||||||| ||| |||| |||||| | | | ||||| ||||||||||||| |||||||||||| |||||| ||||    
T  6427141 ctagcatctcacacaaattttttaaataggacctactaatcaactatcaataattttatatcattatattttaatttt 6427218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 7288395 - 7288242
Alignment:
Q  57 ttttttacgtaaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcat 156  Q
    |||| ||| ||||||||||||| || || | || | |||||||||||| ||  | |||||||  ||||||  | |||||| ||| |||| ||||||||||    
T  7288395 ttttatacttaaatgagtctcatgtatagatatcacttatttataattgtttcatagtagtatctaataagaacttaatccctccaacccagcatctcat 7288296  T
Q  157 acacatttcttaaatggaatccactaaccaactatcaataaatttatatcatta 210  Q
    | | ||||||||||||  |   ||||| |||||||| |||| ||||||||||||    
T  7288295 agaaatttcttaaatgagacttactaatcaactatcgataactttatatcatta 7288242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 5978573 - 5978625
Alignment:
Q  163 ttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    ||||||||||| | ||||||| ||||||||||||| |||||||||||| ||||    
T  5978573 ttcttaaatgggacccactaatcaactatcaataactttatatcattatattt 5978625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 28567895 - 28567768
Alignment:
Q  142 aacctagcatctcatacacatttcttaaatggaatccac--taaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtg 237  Q
    |||| ||||||||||||| ||| ||||||||  | ||||  ||| ||||||||||||| |||||||||||| |||| |  ||||||| ||| ||| || |    
T  28567895 aacccagcatctcatacaaattacttaaatg--agccacgataagcaactatcaataactttatatcattatatttcaattttttaatattaaaatagag 28567798  T
Q  238 tcggtcccacttaagatt-agggtcttaag 266  Q
    | |||||| ||||||||| |||||||||||    
T  28567797 tgggtcccgcttaagattgagggtcttaag 28567768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 28575488 - 28575361
Alignment:
Q  142 aacctagcatctcatacacatttcttaaatggaatccac--taaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtg 237  Q
    |||| ||||||||||||| ||| ||||||||  | ||||  ||| ||||||||||||| |||||||||||| |||| |  ||||||| ||| ||| || |    
T  28575488 aacccagcatctcatacaaattacttaaatg--agccacgataagcaactatcaataactttatatcattatatttcaattttttaatattaaaagagag 28575391  T
Q  238 tcggtcccacttaagatt-agggtcttaag 266  Q
    | |||||| ||||||||| |||||||||||    
T  28575390 tgggtcccgcttaagattgagggtcttaag 28575361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 38937873 - 38937754
Alignment:
Q  149 catctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtccca 246  Q
    ||||||| ||| | || |||||| | |||||| || |||||||||| || |||||||||| |||| |||  ||||||| ||| ||||  ||| ||| |||    
T  38937873 catctcacacaaagtttttaaataggatccacaaatcaactatcaacaactttatatcatcacatattaattttttaatattaaaaagatgtgggttcca 38937774  T
Q  247 cttaagattagggtcttaag 266  Q
    ||||||||| ||||||||||    
T  38937773 cttaagattggggtcttaag 38937754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 5139648 - 5139785
Alignment:
Q  77 cacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaat 176  Q
    |||||||||| || | || ||||||||||||  |  ||||||| |||||| || |||||| ||| |||| || |||||| ||| |  ||||||||| ||     
T  5139648 cacgtgtacacataacttgtttataatttttttaatgtagtacctaataa-tacttaatcactccaacccag-atctcacacaaagctcttaaatgaaac 5139745  T
Q  177 ccactaaccaactatcaataaatttatatcattacatttt 216  Q
     |||||| ||||||||||||| |||||||||||| |||||    
T  5139746 tcactaatcaactatcaataattttatatcattatatttt 5139785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 12734125 - 12734028
Alignment:
Q  147 agcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtc 243  Q
    ||||||||| ||| ||||||||||||  | ||||||| ||||||||   || |||||||||||||||||||  ||||||| ||| ||||||||| ||||    
T  12734125 agcatctcacacaaatttcttaaatgaga-ccactaatcaactatcctcaactttatatcattacattttaattttttaatattaaaaaagtgtaggtc 12734028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 23812598 - 23812681
Alignment:
Q  133 aatctctcaaacctagcatctcatacaca-tttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||| || ||||||||||| ||| | ||| |||||||| || |||||| ||||||||||||| ||||||| |||| ||||    
T  23812598 aatctctccaatctagcatctcacacaaaattttttaaatggtattcactaatcaactatcaataactttatataattatattt 23812681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 23982295 - 23982222
Alignment:
Q  179 actaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaa 251  Q
    ||||||||||||||||||| |||||||||||| |||| |  ||||||| ||| ||||||||| |||||| |||||    
T  23982295 actaaccaactatcaataactttatatcattatatttcaattttttaatattaaaaaagtgt-ggtcccgcttaa 23982222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 5535765 - 5535902
Alignment:
Q  77 cacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaat 176  Q
    |||||||||| || | | ||||||||||||| || | |||||| | ||||  | | |||| ||| ||||||| |||||| ||| | |||||||| ||||     
T  5535765 cacgtgtacacatcactcatttataattttttaatattagtaccttataagcactcaatcactccaacctag-atctcacacaaagttcttaaacggaac 5535863  T
Q  177 ccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||| || ||||| ||||||| |||||||||||| ||||    
T  5535864 ccacaaatcaactttcaataactttatatcattatattt 5535902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 9134247 - 9134166
Alignment:
Q  133 aatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||| ||||||||||| |||||| ||| | ||||||||||  |  |||||| ||||||||||||| |||||||||||| ||||    
T  9134247 aatcactcaaacctag-atctcacacaaagttcttaaatgagactcactaatcaactatcaataactttatatcattatattt 9134166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 11777722 - 11777776
Alignment:
Q  161 atttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    ||||||||||||  | | ||||| ||||||||||||| |||||||||||||||||    
T  11777722 atttcttaaatgagacctactaatcaactatcaataactttatatcattacattt 11777776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 4479669 - 4479616
Alignment:
Q  91 atttatttataatttttcaacagtagtacttaataaatatttaatctctcaaac 144  Q
    ||||||||||||||||| ||| ||||||||||| ||| ||||||| ||| ||||    
T  4479669 atttatttataattttttaactgtagtacttaacaaacatttaatatcttaaac 4479616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 31128546 - 31128665
Alignment:
Q  95 atttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaa 194  Q
    ||||||||||||| || |||||||| ||||||  ||| |||| ||| ||||||  |||||  ||| | ||||||||||  | | |||||  |||||||||    
T  31128546 atttataattttttaatagtagtacctaataagcattcaatcactctaacctaa-atctctcacaaagttcttaaatgagacctactaataaactatcaa 31128644  T
Q  195 taaatttatatcattacattt 215  Q
    ||| |||||||||||| ||||    
T  31128645 taactttatatcattatattt 31128665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 37673805 - 37673869
Alignment:
Q  150 atctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatt 214  Q
    |||||| ||| | ||||||||| | | ||||||| ||||||||||||| ||||||||| ||||||    
T  37673805 atctcacacaaagttcttaaattggacccactaatcaactatcaataattttatatcactacatt 37673869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 251
Target Start/End: Original strand, 32658386 - 32658572
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||||||||| ||| || | | ||||||||||||| || |||||||| ||||||| | | |||| ||| |||| |  |||||| ||| | |||    
T  32658386 taaatgggtctcacgtggacacatcactcatttataattttttaatagtagtacctaataaacactaaatcactccaacccat-atctcacacaaagttc 32658484  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaa 251  Q
    |||||||||||||||||| ||||||||||||| ||||||||| || ||||||  ||||||| ||| ||| ||||| |||||| |||||    
T  32658485 ttaaatggaatccactaatcaactatcaataactttatatcagtatattttaattttttaatattaaaagagtgtgggtcccgcttaa 32658572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 7693890 - 7694074
Alignment:
Q  73 gtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatg 172  Q
    ||||||||| |||| || | | ||||||||||||| |  | |||||| |||||| || | |||| ||| |||| |  |||||| ||| |||| |||||||    
T  7693890 gtctcacgtatacacatcactcatttataattttttagtaatagtacctaataagtactcaatccctccaacccataatctcacacaaattttttaaatg 7693989  T
Q  173 gaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagatt 255  Q
    ||| ||||||| ||||||||||||| || |||||| ||||||| |  ||||||| ||| ||||||||| |||||| |||||||||    
T  7693990 gaacccactaatcaactatcaataacttcatatcaatacatttcaattttttaatattaaaaaagtgtaggtccctcttaagatt 7694074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 9491836 - 9491908
Alignment:
Q  187 actatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagattag 257  Q
    ||||||||||| |||||||||||||||||||  ||||||| ||| ||||| ||| ||||||||||||||||||    
T  9491836 actatcaataactttatatcattacattttaattttttaatattaaaaaaatgtgggtcccacttaagattag 9491908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 202
Target Start/End: Complemental strand, 33755903 - 33755768
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||||| ||||| | |||| |||||||| |||||| || |||||||| |||||| |||| |||| ||| |||  |  |||||| ||| | |||    
T  33755903 taaatgggtctcaagtgtatacattacttatttattattttttaatagtagtacctaataagtattcaatcactccaacacaa-atctcacacaaaattc 33755805  T
Q  166 ttaaatggaatccactaaccaactatcaataaattta 202  Q
    ||||||| |||||||||| ||||||||||||| ||||    
T  33755804 ttaaatgaaatccactaatcaactatcaataacttta 33755768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 6988322 - 6988184
Alignment:
Q  83 tacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccacta 182  Q
    |||| |||| || |||||||||||  || ||| |||| ||||||| | |||||| ||  || |||| |||||||||| |||| ||||||| || | ||||    
T  6988322 tacacattacttgtttataattttataatagtggtacctaataaaaacttaatcactttaatctagtatctcataca-attttttaaatgaaacctacta 6988224  T
Q  183 accaactatcaataaatttatatcattacattttattttt 222  Q
    | ||||||||||||| |||||||||| |||||||| ||||    
T  6988223 aacaactatcaataattttatatcatcacattttaatttt 6988184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 1624193 - 1624269
Alignment:
Q  81 tgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcata 157  Q
    |||||| || ||||| ||||||||||| || | || || |||||||||||||||||||| ||||||||||| |||||    
T  1624193 tgtacacataatttaattataattttttaataataatagttaataaatatttaatctcttaaacctagcatttcata 1624269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 32977416 - 32977519
Alignment:
Q  150 atctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccac 247  Q
    |||||| ||| | ||||||||||| | ||||||| ||||||||||||| |||||| || ||||||| |  ||||||||||| ||| ||||  ||||||||    
T  32977416 atctcacacaaagttcttaaatgggacccactaatcaactatcaataactttataccactacatttcaattttttaacattaaaagagtgcaggtcccac 32977515  T
Q  248 ttaa 251  Q
    ||||    
T  32977516 ttaa 32977519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 25099128 - 25099050
Alignment:
Q  179 actaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagatt 255  Q
    ||||| ||||||||||||| |||||||||||| ||||||  ||||||| ||| || |||||| |||||||||| |||||    
T  25099128 actaatcaactatcaataattttatatcattatattttaattttttaatattaaacaagtgttggtcccacttgagatt 25099050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 387794 - 387697
Alignment:
Q  161 atttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttt---atttttaacatttaaaaagtgtcggtcccacttaagatt 255  Q
    |||||||||||   | ||||||| ||||||||||||| ||||||| |||| |||||    ||||||| ||||||||| ||| | ||||||||||||||    
T  387794 atttcttaaataagacccactaatcaactatcaataactttatattattatatttttaattttttaatatttaaaaaatgtggatcccacttaagatt 387697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 18804218 - 18804285
Alignment:
Q  148 gcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||| ||| ||||| |||||||||   ||||| ||||||||||||| ||||||| |||||||||    
T  18804218 gcatctcacacaaatttcataaatggaacttactaatcaactatcaataattttatattattacattt 18804285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 22281824 - 22281914
Alignment:
Q  163 ttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaa 251  Q
    ||||||||||| || |||||| |||| |||||||| |||||||||||| |||| |  ||||||||||| ||| ||||  ||| ||||||||    
T  22281824 ttcttaaatgggattcactaatcaaccatcaataactttatatcattatatttcaattttttaacattaaaagagtgcgggtgccacttaa 22281914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 1947018 - 1947084
Alignment:
Q  149 catctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    ||||||||||| ||||||||| | | ||||| ||| ||| ||||| ||| |||||||||||||||||    
T  1947018 catctcatacaaatttcttaagtaggatccattaatcaattatcattaattttatatcattacattt 1947084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 5002414 - 5002479
Alignment:
Q  150 atctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||| ||| | ||||||||||| | ||||||| ||||||||||||| ||||||| |||| ||||    
T  5002414 atctcacacaaagttcttaaatgggacccactaatcaactatcaataactttatattattatattt 5002479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 42831801 - 42831653
Alignment:
Q  74 tctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatgg 173  Q
    |||||| |||||| |||| | ||||||||||||| || |||||||| ||||||  | | |||  ||| |||||||||||||| | | ||||||||||||     
T  42831801 tctcacatgtacatattactcatttataattttttaatagtagtacctaataagaactaaattcctccaacctagcatctcacaaaaatttcttaaatga 42831702  T
Q  174 aatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
     ||||| ||| ||||||||||||| ||||||||||||||||||| ||||    
T  42831701 gatccattaatcaactatcaataattttatatcattacattttaatttt 42831653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 246
Target Start/End: Original strand, 52353749 - 52353930
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| ||| |||||||||| || | | ||||||||||||| || || ||||| ||||||  | |  ||| ||| || | ||||||||| ||| |||||    
T  52353749 taaatgggtcccacgtgtacacatcactaatttataattttttaatagcagtacctaataagcactcgatccctccaagc-agcatctcacacaaatttc 52353847  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtccca 246  Q
    |||||| ||| ||||||| ||||||||||||| ||||||||||||||||| |  ||||||| ||| ||||||| | |||||||    
T  52353848 ttaaatagaacccactaatcaactatcaataactttatatcattacatttcaattttttaatattaaaaaagtatgggtccca 52353930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 51061618 - 51061770
Alignment:
Q  103 tttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaattta 202  Q
    ||||| || |||||||||||||||||| | |||||||| ||||||| || | | ||| ||||||||||||| | || |||| | ||||||||||| |||     
T  51061618 ttttttaatagtagtacttaataaatactcaatctctccaacctagtattttacacaaatttcttaaatgggacccgctaatctactatcaataactttc 51061717  T
Q  203 tatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaaga 253  Q
    ||||||||||||| |  |||||||  || ||||||| | ||| ||||||||||    
T  51061718 tatcattacatttcaattttttaattttaaaaaagtatgggttccacttaaga 51061770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 38601004 - 38601112
Alignment:
Q  147 agcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttt-atttttaacatttaaaaagtgtcggtccc 245  Q
    ||||||||| ||| |||| |||||||||  ||||||| ||| ||||||||| |||||||||||||||||| |||||||| ||| || || ||| | ||||    
T  38601004 agcatctcacacaaattttttaaatggac-ccactaatcaattatcaataactttatatcattacattttaatttttaatattaaagaattgtggatccc 38601102  T
Q  246 acttaagatt 255  Q
    ||||||||||    
T  38601103 acttaagatt 38601112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 47783614 - 47783762
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||||||||||||| || |||| |||||||||||| || | ||||| |||||||| | | |||| ||| || ||   |||||| ||| | |||    
T  47783614 taaatgggtctcacgtgtacacatcatttgtttataattttttaataatagtatttaataaacactcaatcactccaa-ctcaaatctcacacaaagttc 47783712  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||||| | | ||| ||||||||||||| |||||||||||| ||||    
T  47783713 ttaaatggaacctattaatcaactatcaataattttatatcattatattt 47783762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 11566958 - 11567037
Alignment:
Q  185 caactatcaataaatttatatcattacattttatttttaacatttaaaaagtgtcggtcccacttaagattagggtcttaag 266  Q
    ||||||||||||| ||||||||||||||||| ||||||   || |||||||||  ||||||| |||||||| ||||||||||    
T  11566958 caactatcaataactttatatcattacatttcatttttttaatataaaaagtg--ggtcccatttaagattggggtcttaag 11567037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 44665360 - 44665425
Alignment:
Q  150 atctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||||| || ||||||||| ||| |||||| ||||||||||||| |||||||||||| ||||    
T  44665360 atctcatacaaatctcttaaatgaaatacactaatcaactatcaataattttatatcattatattt 44665425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 49003354 - 49003471
Alignment:
Q  96 tttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaat 195  Q
    |||||||||||| || |||| ||| |||||| |||| |||||||| |||| ||||||||| ||| | |||||||||   | |||| || |||||||||||    
T  49003354 tttataattttttaatagtaatacctaataagtattcaatctctccaaccgagcatctcacacaaaattcttaaattagacccacaaatcaactatcaat 49003453  T
Q  196 aaatttatatcattacat 213  Q
    || ||||||  |||||||    
T  49003454 aactttatacaattacat 49003471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 264
Target Start/End: Original strand, 51504493 - 51504693
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||||||||||| | || | | ||||||||||||| || |||||||| || ||| || | |||  ||| |||| | |||| || |||  ||||    
T  51504493 taaatgggtctcacgtgtatacatcactcatttataattttttaatagtagtacgtattaagtactcaattcctccaacccatcatcccacacaagtttc 51504592  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttt--atttttaacatttaaaaagtgtcggtcccacttaagattagggtctt 263  Q
    |||||| | | ||||| | ||||||| ||||| |||||||||  |||||||  |||||| |   ||||||||||| ||||||| |||||||| |||||||    
T  51504593 ttaaataggacccacttatcaactattaataattttatatcacaacattttcaattttttaatattaaaaagtgtgggtcccatttaagattggggtctt 51504692  T
Q  264 a 264  Q
    |    
T  51504693 a 51504693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 11120632 - 11120560
Alignment:
Q  150 atctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    |||||| ||| | |||||||||  |||||||||| ||||||||||||| |||||||||||| |||||| ||||    
T  11120632 atctcacacaaagttcttaaatacaatccactaatcaactatcaataactttatatcattatattttaatttt 11120560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 11449356 - 11449237
Alignment:
Q  95 atttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaa 194  Q
    ||||||||||||| |||| |||||| ||||||  ||| |||||||||||||| ||||| || | | |||||||||||  ||  || ||| ||||||| ||    
T  11449356 atttataattttttaacaatagtacctaataatcattcaatctctcaaacctggcatcacacataaatttcttaaatataactcattaatcaactat-aa 11449258  T
Q  195 taaatttatatcattacattt 215  Q
     || |||||||||||||||||    
T  11449257 aaactttatatcattacattt 11449237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 13984172 - 13984053
Alignment:
Q  95 atttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaa 194  Q
    ||||||||||||| || |||||||  |||||| || | |||||||| |||| || |||||| ||| | ||||||||||  | | ||||| ||||||||||    
T  13984172 atttataattttttaatagtagtatctaataagtactcaatctctctaacccag-atctcacacaaaattcttaaatgagacctactaatcaactatcaa 13984074  T
Q  195 taaatttatatcattacattt 215  Q
    ||| ||||||||| |||||||    
T  13984073 taactttatatcactacattt 13984053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 11241534 - 11241628
Alignment:
Q  161 atttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaaga 253  Q
    |||| ||||| || ||||||||| ||||||||||||| |||||||||||| |||| |  ||| ||| ||| ||||||||| | ||||||||||||    
T  11241534 attttttaaaaggtatccactaatcaactatcaataactttatatcattatatttcaattttataatattaaaaaagtgtggatcccacttaaga 11241628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 47364479 - 47364380
Alignment:
Q  73 gtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatg 172  Q
    ||||||||||| || |||| | ||||||||||||| || |||||||  ||||||||| |||||| ||  |||  ||||||||| ||| ||||||||||||    
T  47364479 gtctcacgtgttcacattactcatttataatttttaaatagtagtatataataaatacttaatcacttcaactgagcatctcacacaaatttcttaaatg 47364380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 43822856 - 43822759
Alignment:
Q  150 atctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtccc 245  Q
    |||||| ||| | ||||||||||| | ||||||| ||||||||||||| ||||||||| ||||||| |  ||||||| ||| ||| ||||| ||||||    
T  43822856 atctcacacaaagttcttaaatgggacccactaatcaactatcaataactttatatcactacatttcaattttttaatattaaaagagtgtaggtccc 43822759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 36298036 - 36297998
Alignment:
Q  177 ccactaaccaactatcaataaatttatatcattacattt 215  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  36298036 ccactaatcaactatcaataattttatatcattacattt 36297998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 9505556 - 9505632
Alignment:
Q  179 actaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaaga 253  Q
    ||||| ||||||||||||| ||||||| ||||||| | |  ||||||| ||| |||| |||| ||||||||||||||    
T  9505556 actaatcaactatcaataactttatattattacatataaattttttaatattaaaaaggtgtgggtcccacttaaga 9505632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 51263259 - 51263198
Alignment:
Q  161 atttcttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    |||||||||||| ||  |||||| ||||||||||||| ||||| |||||| |||||| ||||    
T  51263259 atttcttaaatgaaacacactaatcaactatcaataactttatgtcattatattttaatttt 51263198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 25813803 - 25813751
Alignment:
Q  163 ttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    ||||||||||  | ||||||| ||||||||||||| ||||||||| |||||||    
T  25813803 ttcttaaatgagacccactaatcaactatcaataattttatatcactacattt 25813751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 32851816 - 32851868
Alignment:
Q  163 ttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    ||||||||||| |  |||||| ||||||||||||| ||||||||| |||||||    
T  32851816 ttcttaaatgggacacactaatcaactatcaataattttatatcactacattt 32851868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 38902127 - 38902067
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataa 126  Q
    |||||| |||||||||||||| || | | ||||||||||||| || |||||||| ||||||    
T  38902127 taaatgggtctcacgtgtacatatcactcatttataattttttaatagtagtacctaataa 38902067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 43302083 - 43302227
Alignment:
Q  70 tgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaa 169  Q
    |||||||||| |||||| || | | ||||||||||||| || |||||||| ||||||||| | |||| ||| || |||| |||||| ||| | |||||||    
T  43302083 tgagtctcacctgtacacataactcatttataattttttaatagtagtacctaataaatactcaatcactccaatctag-atctcacacataattcttaa 43302181  T
Q  170 atggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||| | ||||||| ||||||||||||| |||||||||||| ||||    
T  43302182 atgggacccactaatcaactatcaataactttatatcattatattt 43302227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 48615259 - 48615404
Alignment:
Q  77 cacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaat 176  Q
    |||||||||| | || | |||| |||||||| |||  |||||| ||||||| ||| |||  ||| || | |||| |||| ||| |||||||||| |||||    
T  48615259 cacgtgtacacaatactcatttttaattttttaacgttagtacctaataaacattcaattcctccaagccagcacctcacacaaatttcttaaacggaat 48615358  T
Q  177 ccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    ||| ||| || |||||||||| ||||||||||||||||| ||||||    
T  48615359 ccattaatcatctatcaataactttatatcattacatttcattttt 48615404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 255
Target Start/End: Complemental strand, 2008707 - 2008562
Alignment:
Q  112 agtagtacttaataaa-tatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcatta 210  Q
    |||||||||||||||| || | |||| ||| |||| || |||||| ||| ||||||||||||||| ||  ||| ||||||||||||| |||||| |||||    
T  2008707 agtagtacttaataaagtactcaatccctctaacccag-atctcacacaaatttcttaaatggaacccgttaatcaactatcaataattttataccatta 2008609  T
Q  211 catttta--tttttaacatttaaaaagtgtcggtcccacttaagatt 255  Q
    ||||| |  ||||||| ||| ||||||| |  |||||||||||||||    
T  2008608 catttcaattttttaatattaaaaaagtatgtgtcccacttaagatt 2008562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 266
Target Start/End: Complemental strand, 4958405 - 4958199
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagca---tctcatacacat 162  Q
    ||||||||||  ||||||||| || ||| ||||||||||||| || |||||||  ||||||| | | |||| ||| |||| | ||   ||||| |||  |    
T  4958405 taaatgagtcctacgtgtacacatcattcatttataattttttaatagtagtatctaataaacactcaatccctccaaccgaacaacatctcacacaact 4958306  T
Q  163 ttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagat-taggg 259  Q
    |||||||||| || |||| || |||||||||| || ||||||||||||||| | |  ||||||| ||| |||| |||| | |||||||||||||  ||||    
T  4958305 ttcttaaatgaaacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtggatcccacttaagatggaggg 4958206  T
Q  260 tcttaag 266  Q
    |||||||    
T  4958205 tcttaag 4958199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 48767212 - 48767318
Alignment:
Q  161 atttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagatt-ag 257  Q
    ||||||||||||  | ||||||| ||||||||||||| ||||||||||| ||||| |  ||||||  ||| |||||||||  ||||||||||||||| ||    
T  48767212 atttcttaaatgagacccactaatcaactatcaataactttatatcattgcatttcaattttttattattaaaaaagtgttagtcccacttaagattgag 48767311  T
Q  258 ggtctta 264  Q
    |||||||    
T  48767312 ggtctta 48767318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 29914362 - 29914512
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttc-aacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacattt 164  Q
    ||||||||||||| || |||  || | |||||||||||||||  || |||| ||| ||||||| | |||||| ||| ||| || ||||||| ||| ||||    
T  29914362 taaatgagtctcaagtttacgcatcacttatttataatttttataatagtaatacctaataaacacttaatccctccaacttaacatctcacacaaattt 29914461  T
Q  165 cttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    | ||||||| |  | |||| ||||||||||||| ||||||| |||||||||    
T  29914462 cataaatgggactcgctaatcaactatcaataactttatattattacattt 29914512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 39853866 - 39853784
Alignment:
Q  133 aatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||| ||| |||||||||||||| | | ||||||||||||| | ||||||| ||||||||||||| |||||| ||||| ||||    
T  39853866 aatcgctccaacctagcatctcacaaaaatttcttaaatgggacccactaatcaactatcaataactttataccattatattt 39853784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 32724315 - 32724206
Alignment:
Q  149 catctcatacacatttcttaaatggaatccactaaccaac---tatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtc 243  Q
    ||||||| ||| ||||||||||||||| |||||||  |||   ||||||||| ||||||||||||||| | |  ||||||| ||| |||| |||| ||||    
T  32724315 catctcaaacaaatttcttaaatggaacccactaattaactagtatcaataactttatatcattacatatcaattttttaatattaaaaaggtgtgggtc 32724216  T
Q  244 ccacttaaga 253  Q
    ||||||||||    
T  32724215 ccacttaaga 32724206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 266
Target Start/End: Complemental strand, 19987314 - 19987120
Alignment:
Q  75 ctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatgga 174  Q
    ||||| |||||| || ||| ||||||||||||| || |||||||| |||||| ||  | ||| ||| |||| | ||||||| ||| | |||||||||||     
T  19987314 ctcacatgtacacatcattcatttataattttttaatagtagtacataataagtacatgatccctccaacccaacatctcacacaaagttcttaaatggg 19987215  T
Q  175 atccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagatt-agggtcttaag 266  Q
    | | || || | ||||||||||| |||| ||||||||||   |  ||||||| ||| ||||  ||| |||| ||||||||||| |||||||||||    
T  19987214 acctacaaatcgactatcaataactttaaatcattacataacaattttttaatattaaaaagttgtgggtctcacttaagattgagggtcttaag 19987120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 36657849 - 36657999
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||||| ||||||| |||  | ||||||||||||| || |||| ||  ||||||  | | |||| ||| |||| || |||||| ||| | |||    
T  36657849 taaatgggtctcatgtgtacacattgctcatttataattttttaatagtactatctaataagcactcaatcactccaacccag-atctcacacaaagttc 36657947  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttta 217  Q
    |||||||| | ||||||| ||||||||||||| |||||| ||||| ||||||    
T  36657948 ttaaatgggacccactaatcaactatcaataattttataccattatatttta 36657999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 46282171 - 46282234
Alignment:
Q  147 agcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcatta 210  Q
    |||||||||| || ||||||||||||  | ||||||| ||||||||||||| ||||||||||||    
T  46282171 agcatctcattcaaatttcttaaatgagacccactaatcaactatcaataattttatatcatta 46282234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 6068177 - 6068088
Alignment:
Q  150 atctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtg 237  Q
    |||||||||| |||| ||||||  |||||||||| |||||| |||||| ||| ||||||||||||| |  ||||||| ||| ||||||||    
T  6068177 atctcatacaaattttttaaataaaatccactaatcaactaccaataattttctatcattacatttcaattttttaatattaaaaaagtg 6068088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 44441755 - 44441609
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| ||||||  |||||| || | | ||||||||||||| ||| ||||||| ||||||  | | ||| |||| |||| ||||||||| | | |||||    
T  44441755 taaatgggtctcaaatgtacacatcactcatttataattttttaacggtagtacctaataagaactcaatatctccaacccagcatctcacaaaaatttc 44441656  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattaca 212  Q
    |||||||  | ||||||| |||||||||| || |  |||||||||||    
T  44441655 ttaaatgagacccactaatcaactatcaacaactggatatcattaca 44441609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 264
Target Start/End: Original strand, 47841382 - 47841582
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||||||| ||| |||||| || | | ||||||||||||  || ||||||| ||||||| || | |||| ||| |||| ||||||||| | | | |||    
T  47841382 taaatgagtcccacatgtacacataactcatttataattttgtaatagtagtatttaataagtactcaatccctccaaccaagcatctcacataaagttc 47841481  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagattagggtctt 263  Q
    |||||||  |  ||| || ||||||||||||| |||||| ||| |||| | |  ||||||| ||| |||| ||||  |||||||||||  || |||||||    
T  47841482 ttaaatgagactcacaaatcaactatcaataactttataccatcacatatcaattttttaatattaaaaaggtgtgagtcccacttaaagttggggtctt 47841581  T
Q  264 a 264  Q
    |    
T  47841582 a 47841582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 36901033 - 36901153
Alignment:
Q  103 tttttcaacagtagtacttaataaatattt-aatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaattt 201  Q
    ||||| || |||||||| ||||||| | || |||| ||| |||| || |||||| | | ||||||||||||  | | ||||| ||||||||||||| |||    
T  36901033 ttttttaatagtagtacctaataaagaattcaatccctccaaccgagtatctcacaaaaatttcttaaatgagacctactaatcaactatcaataatttt 36901132  T
Q  202 atatcattacattttattttt 222  Q
    ||||||||| |||||| ||||    
T  36901133 atatcattatattttaatttt 36901153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 44441347 - 44441403
Alignment:
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    |||||||| | ||||||| ||||||||||||| ||||||||| ||||||||| ||||    
T  44441347 ttaaatgggacccactaatcaactatcaataactttatatcactacattttaatttt 44441403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 23156266 - 23156356
Alignment:
Q  131 ttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    |||||| ||| ||||||| |||||| ||| | ||||||||||  | ||| ||| ||||||||||||| ||||||||| ||||||||| ||||    
T  23156266 ttaatccctccaacctag-atctcacacaaagttcttaaatgagacccattaatcaactatcaataactttatatcactacattttaatttt 23156356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 4874945 - 4874982
Alignment:
Q  185 caactatcaataaatttatatcattacattttattttt 222  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  4874945 caactatcaataactttatatcattacattttaatttt 4874982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 9429802 - 9429729
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctct 139  Q
    |||||| || ||||||||||| |  ||| ||||||||||||| ||  ||||||| ||||||||||| |||||||    
T  9429802 taaatgggtgtcacgtgtacacaacattcatttataattttttaattgtagtacctaataaatattcaatctct 9429729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 38224020 - 38223948
Alignment:
Q  185 caactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagatt 255  Q
    |||||||||||||  |||||||||||||| | |  ||||||| ||| |||| |||| ||||||||||||||||    
T  38224020 caactatcaataacattatatcattacatataaattttttaatattaaaaaggtgtgggtcccacttaagatt 38223948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 25307538 - 25307590
Alignment:
Q  161 atttcttaaatggaatccactaaccaactatcaataaatttatatcattacat 213  Q
    ||||||||||||  |||||| || |||| ||||||||| ||||||||||||||    
T  25307538 atttcttaaatgagatccacaaatcaacaatcaataaacttatatcattacat 25307590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 29770788 - 29770832
Alignment:
Q  74 tctcacgtgtacaaattatttatttataatttttcaacagtagta 118  Q
    |||||||||||||||| |||||||||||| |||| || |||||||    
T  29770788 tctcacgtgtacaaatcatttatttataaatttttaatagtagta 29770832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 31330529 - 31330409
Alignment:
Q  95 atttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaa 194  Q
    ||||||||||||| ||  ||||||| ||||||  | | |||| ||| |||| | ||| ||| ||| ||||||||||||  |   ||||| ||||||||||    
T  31330529 atttataattttttaatggtagtacctaataagcactcaatccctccaacccaacatttcacacaaatttcttaaatgagacgtactaatcaactatcaa 31330430  T
Q  195 taaatttatatcattacattt 215  Q
    ||| | |||||||||||||||    
T  31330429 taagtatatatcattacattt 31330409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 38360826 - 38360874
Alignment:
Q  149 catctcatacacatttcttaaatggaatccactaaccaactatcaataa 197  Q
    ||||||| ||| |||| ||||||||||| |||| |||||||||||||||    
T  38360826 catctcacacaaattttttaaatggaattcacttaccaactatcaataa 38360874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 6710832 - 6710987
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||||||||||||| || | | ||||||||||||| || |||||||  ||||||  | | | || ||| ||||||| |||||| ||| | |||    
T  6710832 taaatgggtctcacgtgtacagatcactcatttataattttttaatagtagtatctaataagcactcagtcactccaacctag-atctcacacaaagttc 6710930  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    |||||| ||||| | ||| ||||||||||||| ||||||||||||||||||| ||||    
T  6710931 ttaaatagaatcaattaatcaactatcaataactttatatcattacattttaatttt 6710987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 40999747 - 40999639
Alignment:
Q  161 atttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagatt-ag 257  Q
    ||||||||||||||| ||||||| |||| |||||||| |||||||||||| |||| |   |||||| ||| || |||||| |||||||||||||||| ||    
T  40999747 atttcttaaatggaacccactaatcaaccatcaataactttatatcattatatttcaatcttttaatattaaacaagtgtgggtcccacttaagattgag 40999648  T
Q  258 ggtcttaag 266  Q
    |||||||||    
T  40999647 ggtcttaag 40999639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 34375203 - 34375041
Alignment:
Q  74 tctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatgg 173  Q
    |||||| |||||| || | ||||||||||||||| || |||||||| ||||||  ||| |||| ||| ||||||  |||||| | | ||  |||||||||    
T  34375203 tctcacatgtacacatcacttatttataattttttaatagtagtacctaataagaattcaatccctccaacctaagatctcaaaaaaat--cttaaatgg 34375106  T
Q  174 aatccactaaccaactatcaataaatttatatcattacattt-tatttttaacatttaaaaagtg 237  Q
     | ||| ||| ||||||||||||| ||||||| |||||||||  |||||||| ||| ||||||||    
T  34375105 gacccattaatcaactatcaataactttatattattacatttcaatttttaatattaaaaaagtg 34375041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 266
Target Start/End: Original strand, 65383 - 65554
Alignment:
Q  96 tttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaat 195  Q
    |||||||||||| ||  ||||||| ||||||| | |||||| ||| || | | ||||||| ||| |||| |||||||  | ||| ||| |||||||||||    
T  65383 tttataattttttaattgtagtacataataaacacttaatccctccaatccaacatctcacacaaatttattaaatgagaaccattaatcaactatcaat 65482  T
Q  196 aaatttatatcattacattttatttttaacat-ttaaaaagtgtcggtcccacttaagattagggtcttaag 266  Q
    || ||| ||||||||||||| | ||||   || |||||||||||  |||||  |||||||||| ||||||||    
T  65483 aagtttgtatcattacatttcaatttttttatattaaaaagtgtaagtcccgtttaagattagagtcttaag 65554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 5038852 - 5038719
Alignment:
Q  91 atttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaa--atggaatccactaaccaac 188  Q
    ||||||||||||||||| || | ||||| |||||||  ||| |||||||| ||||  |||||||| ||| |||||||||   ||  | ||||||| ||||    
T  5038852 atttatttataattttttaataatagtaattaataagcattcaatctctccaacccggcatctcacacaaatttcttaattgtgtgacccactaatcaac 5038753  T
Q  189 tatcaataaatttatatcattacattttattttt 222  Q
    ||||||||| ||||||| |||| |||||| ||||    
T  5038752 tatcaataattttatattattatattttaatttt 5038719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 11922144 - 11921964
Alignment:
Q  31 agagcatctacaacgaagacattcactttt--ttacgtaaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaat 128  Q
    |||||||| |||| | ||||| ||| ||||  |||| |||||| |||||||||||||| |||| | ||||||||||||| || |||||||| ||| ||      
T  11922144 agagcatccacaatggagacactcatttttaattacttaaatgggtctcacgtgtacacattactcatttataattttttaatagtagtacctaaaaagc 11922045  T
Q  129 atttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcatta 210  Q
    | | |||  ||| |||| |  |||||| ||| ||||||||||||| | | ||||| |||||| |||||| ||||||||||||    
T  11922044 actcaattcctccaaccca-aatctcacacaaatttcttaaatgggacctactaatcaactaccaataactttatatcatta 11921964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 44887267 - 44887349
Alignment:
Q  133 aatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||| |||||||| | ||||||| ||| |||| |||||||  ||||| ||| |||||||||||||||||||||||||| ||||    
T  44887267 aatccctcaaacccaacatctcaaacaaattttttaaatgagatccaataatcaactatcaataaatttatatcattatattt 44887349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 3669002 - 3668846
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    ||||||||||||||||||| | |||| | ||||||||||||| || ||||||| ||||||| || | ||||  || |||  |  || ||| ||| |||||    
T  3669002 taaatgagtctcacgtgtatatattactaatttataattttttaatagtagtaattaataagtactcaatccgtccaactcaatatatcacacaaatttc 3668903  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    ||||||   | |||||||  ||||||| |||| ||||||||||||| ||||| ||||    
T  3668902 ttaaataagaaccactaattaactatcgataattttatatcattacgttttaatttt 3668846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 32887670 - 32887753
Alignment:
Q  174 aatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagatt 255  Q
    |||||||||| ||||||| ||||| ||||||| |||||||||||  ||||||| ||| ||| ||||| ||||||| ||||||||    
T  32887670 aatccactaatcaactataaataactttatattattacattttaattttttaatattaaaagagtgtgggtcccaattaagatt 32887753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 36887626 - 36887678
Alignment:
Q  163 ttcttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||| |||||    
T  36887626 ttcttaaatgagatccactaatcaactatcaataaatttatatcattgcattt 36887678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 215
Target Start/End: Complemental strand, 9583305 - 9583157
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    ||||||||||||||||||||  || | ||||||||||||||| || |||||||  ||||||  | | |||| |||||||  || |||||| ||| | |||    
T  9583305 taaatgagtctcacgtgtacgcatcacttatttataattttttaatagtagtatctaataagcactcaatcactcaaactcag-atctcacacaaagttc 9583207  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||| | | ||||||| ||| | ||||||| |||| ||||||| ||||    
T  9583206 ttaaattggacccactaatcaattgtcaataactttacatcattatattt 9583157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 210
Target Start/End: Original strand, 16117872 - 16118016
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||||||||||||| || | | ||||||||||||| || |  | ||| ||||||  | | |||  ||| ||||  |||||||| ||| ||| |    
T  16117872 taaatgggtctcacgtgtacatatcactcatttataattttttaatatcaatacctaataagcactcaattcctccaaccatgcatctcacacatattcc 16117971  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcatta 210  Q
     ||||||| |||||| || ||||||||||||| ||||||||||||    
T  16117972 ataaatggtatccacaaatcaactatcaataactttatatcatta 16118016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 34234964 - 34234858
Alignment:
Q  150 atctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccac 247  Q
    |||||||||| |||| ||||||   | ||||||| ||| ||||||||| ||||||||||||||||| |  ||||||| | ||||||||||| ||| | ||    
T  34234964 atctcatacaaatttattaaattagacccactaatcaattatcaataactttatatcattacatttcaattttttaata-ttaaaaagtgtgggttctac 34234866  T
Q  248 ttaagatt 255  Q
    ||||||||    
T  34234865 ttaagatt 34234858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 18970114 - 18970011
Alignment:
Q  112 agtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattac 211  Q
    |||||||| ||||||| | | |||||||  |||  ||| ||||| ||| |||||||||||| ||  |||||| ||||||| ||||| ||||||| |||||    
T  18970114 agtagtacctaataaacactcaatctcttcaactcagcctctcacacaaatttcttaaatgaaactcactaatcaactattaataactttatataattac 18970015  T
Q  212 attt 215  Q
    ||||    
T  18970014 attt 18970011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 14772886 - 14773023
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||||||| ||||| || ||| ||||||||||||| |||| |||||| |||||| || | |||  ||| |||  || |||||| ||| | |||    
T  14772886 taaatgggtctcacgcgtacacatcattcatttataattttttaacaatagtacctaataagtactcaattcctccaacacag-atctcacacaaagttc 14772984  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttata 204  Q
    |||||||| |  || ||| ||||||||||||| ||||||    
T  14772985 ttaaatgggactcattaatcaactatcaataactttata 14773023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 15269360 - 15269247
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| ||||||| |||||| |||| | ||||||||||||| || |||||| | |||||| |||| |||| ||| |||  | ||| ||||||| ||||     
T  15269360 taaatgggtctcacatgtacacattactcatttataattttttaatagtagtgcctaataagtattcaatccctccaacacatcatatcatacaaattt- 15269262  T
Q  166 ttaaatggaatccac 180  Q
    |||||||| ||||||    
T  15269261 ttaaatgggatccac 15269247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 215
Target Start/End: Complemental strand, 26312623 - 26312486
Alignment:
Q  77 cacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaat 176  Q
    |||||||||| || | | ||||||||||||| || |||||||| ||||||  | | |||  ||| |||  || |||||| ||| |||| |||||| |||     
T  26312623 cacgtgtacacatcactcatttataattttttaatagtagtacctaataagcactcaattcctccaactcag-atctcacacaaatttattaaatagaac 26312525  T
Q  177 ccactaaccaactatcaataaatttatatcattacattt 215  Q
    ||||||| |||||| |||||| ||||| |||||||||||    
T  26312524 ccactaatcaactaccaataactttatgtcattacattt 26312486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 13022796 - 13022833
Alignment:
Q  178 cactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  13022796 cactaatcaactatcaataaatttatattattacattt 13022833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 28857242 - 28857137
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| |||| || | |||| || ||||||||||||||||| |  |||| ||||||||||  ||||||||  || |||| ||||||| | ||| |||||    
T  28857242 taaatgggtcttacttatacacataatttatttataattttttagtagtaatacttaataagaatttaatccttccaacccagcatcttacacaaatttc 28857143  T
Q  166 ttaaat 171  Q
    ||||||    
T  28857142 ttaaat 28857137  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 31050069 - 31050122
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtac 119  Q
    |||||||||||||| |||||| || | ||||||||||||||| || ||||||||    
T  31050069 taaatgagtctcacatgtacacatcacttatttataattttttaatagtagtac 31050122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 31050160 - 31050221
Alignment:
Q  161 atttcttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    |||||||||| ||||||||||||  |  ||||||||| | ||||||||||||||| ||||||    
T  31050160 atttcttaaacggaatccactaattatatatcaataactctatatcattacatttaattttt 31050221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 39368798 - 39368749
Alignment:
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||||||||| ||| ||||||||||||| |||||||  ||||||||    
T  39368798 ttaaatggaatccattaatcaactatcaataattttatatttttacattt 39368749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 16534831 - 16534791
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttt 106  Q
    |||||||||||  |||||||| |||||||||||||||||||    
T  16534831 taaatgagtcttgcgtgtacatattatttatttataatttt 16534791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 34240661 - 34240621
Alignment:
Q  67 aaatgagtctcacgtgtacaaattatttatttataattttt 107  Q
    |||||||| | ||||||||| ||||||||||||||||||||    
T  34240661 aaatgagttttacgtgtacatattatttatttataattttt 34240621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 266
Target Start/End: Original strand, 41520822 - 41521024
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||| || ||||||||||| || | ||||||||||||||| || ||| |||| ||||||  | | |||| ||| |||| ||||||||| ||| | |||    
T  41520822 taaatgggtttcacgtgtacacatcacttatttataattttttaatagtggtacctaataagaactcaatccctccaacccagcatctcacacaaagttc 41520921  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcccacttaagattagggtctt 263  Q
     ||||||| | |||| ||  |||||||||||| |||||| |||||||| | |  ||||||  ||| |||| |||| ||||||||||||||||  ||||||    
T  41520922 ctaaatgggacccacaaattaactatcaataactttataccattacatatcaattttttactattaaaaaggtgtgggtcccacttaagattgaggtctt 41521021  T
Q  264 aag 266  Q
    |||    
T  41521022 aag 41521024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 2375684 - 2375556
Alignment:
Q  93 ttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatc 192  Q
    ||||||||||||||| || |||||||| ||||||| ||| |||| ||||| |||   |||||| ||| | ||||||||||| | ||||||| ||||||||    
T  2375684 ttatttataattttttaatagtagtacctaataaacattcaatcactcaa-cctcaaatctcacacaaagttcttaaatgggacccactaatcaactatc 2375586  T
Q  193 aataaatttatatcattacattttattttt 222  Q
    ||||| ||||||| |||| |||||| ||||    
T  2375585 aataactttatataattatattttaatttt 2375556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 42551051 - 42551197
Alignment:
Q  77 cacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaat 176  Q
    |||||||||| || ||| ||||||||||||| || | |||||| ||||||  | | |||| |||||||||||||||||| ||| |||||||||||  ||     
T  42551051 cacgtgtacacatcattcatttataattttttaataatagtacataataagcaatcaatccctcaaacctagcatctcacacaaatttcttaaatttaaa 42551150  T
Q  177 c-cactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    |  | ||| |||| |||||||| ||||||| ||||||||||| ||||    
T  42551151 cttagtaatcaaccatcaataattttatatgattacattttaatttt 42551197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 8228922 - 8228774
Alignment:
Q  74 tctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatgg 173  Q
    |||||| ||||||||  | | ||||||||||||| |||| |||||  ||||||||| | |||| ||| |||  | ||||||||||| |||| | ||||      
T  8228922 tctcacatgtacaaaccaatcatttataattttttaacaatagtatctaataaatactcaatccctccaacacatcatctcatacagatttttaaaataa 8228823  T
Q  174 aatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
     |||||| || ||||||||||||| | ||||||||||||||| ||||||    
T  8228822 gatccacgaatcaactatcaataattgtatatcattacatttcattttt 8228774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 15468163 - 15468273
Alignment:
Q  147 agcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta--tttttaacatttaaaaagtgtcggtcc 244  Q
    ||||||||| ||| ||||||||||||| ||||||||| ||  ||||||||| |||||||||||| |||| |  ||||||| ||| ||| ||||| ||| |    
T  15468163 agcatctcacacaaatttcttaaatgggatccactaatcatttatcaataattttatatcattaaatttcaattttttaatattaaaagagtgtgggtac 15468262  T
Q  245 cacttaagatt 255  Q
    | |||||||||    
T  15468263 cgcttaagatt 15468273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 35463217 - 35463332
Alignment:
Q  96 tttataatttttcaacagtagtacttaataaatatttaatc-tctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaa 194  Q
    |||||||||||| || |||||||| |||||| || | |||| | ||||||| | ||||||| ||| |||||||||||| ||| ||  || ||||||||||    
T  35463217 tttataattttttaatagtagtacctaataagtactcaatcctttcaaacccaacatctcacacaaatttcttaaatgaaattcataaatcaactatcaa 35463316  T
Q  195 taaatttatatcatta 210  Q
    ||| ||||||||||||    
T  35463317 taattttatatcatta 35463332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 1666743 - 1666872
Alignment:
Q  76 tcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaa 175  Q
    ||||||||||| || ||||| ||||||||||| |||  |||||||| ||||  | | |||||||| |||| ||||| | | ||  |||||||||||||||    
T  1666743 tcacgtgtacacatcatttacttataattttt-aactctagtactttataagcactcaatctctccaacccagcattttacacgaatttcttaaatggaa 1666841  T
Q  176 tccactaaccaactatcaataaatttatatc 206  Q
    || | ||| ||||||||||||| ||||||||    
T  1666842 tctaataatcaactatcaataactttatatc 1666872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 29558500 - 29558345
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    ||||||| || || ||||||| || | | ||||| ||||||| || | ||||||| |||||  | |||||||||  |||  ||||||||| ||| |||||    
T  29558500 taaatgaatcacatgtgtacacatcactcatttacaattttttaataatagtact-aataagcacttaatctcttcaactcagcatctcacacaaatttc 29558402  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    ||||||   ||| | ||| ||||||||||||| ||||||||||||||||||| ||||    
T  29558401 ttaaataagatctaataatcaactatcaataattttatatcattacattttaatttt 29558345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 1309723 - 1309878
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttc 165  Q
    |||||||||| |||||||| | || ||||||||||||||||| || | |||||  ||||||  | | |||| ||| || | |  |||||| ||| | |||    
T  1309723 taaatgagtcccacgtgtatatatcatttatttataattttttaataatagtatctaataagcactcaatcactccaatccaa-atctcacacaaagttc 1309821  T
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattttattttt 222  Q
    |||||| | || |||||| ||| ||||||||| |||||||||||| |||||| ||||    
T  1309822 ttaaattggatacactaatcaattatcaataattttatatcattatattttaatttt 1309878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 11200599 - 11200453
Alignment:
Q  27 tcttagagcatctacaacgaagacattcacttttttacg--taaatgagtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaat 124  Q
    ||||||| ||||||||| ||||||| ||| ||||  | |  |||||||| |||||| ||||| || | | ||||||||||||| || | || ||| ||||    
T  11200599 tcttagaacatctacaatgaagacactcatttttggatgcttaaatgagactcacgcgtacacatcactcatttataattttttaataataatacctaat 11200500  T
Q  125 aaatatttaatctctcaaacctagcatctcatacacatttcttaaat 171  Q
    || |||| ||| |||| |||| ||||| ||| ||| |||||||||||    
T  11200499 aagtattaaatttctccaacccagcatttcacacaaatttcttaaat 11200453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 4432469 - 4432323
Alignment:
Q  91 atttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaacta 190  Q
    ||||||||||||| ||| || |||| ||||||| ||  ||| |||| || ||||  ||||||||| | | ||||||||||||  || || | | || |||    
T  4432469 atttatttataatattttaatagtaatacttaaaaagaattcaatcccttaaacgcagcatctcacaaaaatttcttaaatgagattcattgatcagcta 4432370  T
Q  191 tcaataaatttatatcattacattttatttttaacatttaaaaagtg 237  Q
    ||||||| ||||||| ||||||||| | |||||| ||| ||| ||||    
T  4432369 tcaataactttatataattacatttcaattttaatattaaaagagtg 4432323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 12593205 - 12593139
Alignment:
Q  151 tctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatatcattacatttta 217  Q
    ||||| ||| ||||||||||||  | | ||||| ||| ||||||||| |||||||||||||||||||    
T  12593205 tctcaaacaaatttcttaaatgagaccaactaatcaattatcaataactttatatcattacatttta 12593139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 13486648 - 13486599
Alignment:
Q  166 ttaaatggaatccactaaccaactatcaataaatttatatcattacattt 215  Q
    |||||||||| ||||||| || |||||||||| |||||||||||| ||||    
T  13486648 ttaaatggaacccactaatcagctatcaataactttatatcattatattt 13486599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 31046320 - 31046361
Alignment:
Q  66 taaatgagtctcacgtgtacaaattatttatttataattttt 107  Q
    ||||||||  |||| |||||||||||||||||||||||||||    
T  31046320 taaatgagcttcacatgtacaaattatttatttataattttt 31046361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 33133274 - 33133346
Alignment:
Q  133 aatctctcaaacctagcatctcatacacatttcttaaatggaatccactaaccaactatcaataaatttatat 205  Q
    ||||||||||||  ||||||||| ||| |||||||||||   |  |||||| ||||||||||||| |||||||    
T  33133274 aatctctcaaactcagcatctcacacaaatttcttaaataagactcactaatcaactatcaataactttatat 33133346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 63707 - 63609
Alignment:
Q  73 gtctcacgtgtacaaattatttatttataatttttcaacagtagtacttaataaatatttaatctctcaaacctagcatctcatacacatttcttaaat 171  Q
    ||||||||||||||  | | | ||||||||||||| || |||||||| ||||||  | | |||||||| |||| | ||||||| ||| |||||||||||    
T  63707 gtctcacgtgtacatgtcactaatttataattttttaatagtagtacctaataaggactcaatctctctaacccatcatctcacacatatttcttaaat 63609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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